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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
HL.SW.v1.0.G000619.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family |
NAC |
Protein Properties |
Length: 398aa MW: 45352.2 Da PI: 6.0542 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
HL.SW.v1.0.G000619.1 | genome | HOPBASE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 178.8 | 1.5e-55 | 9 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86
+ppGfrFhPtdeelv +yL+kkv+++k++l +vi+++d+y++ePwdL++ ++e++ewyfFs++dkky+tg+r+nrat +g+Wkat
HL.SW.v1.0.G000619.1 9 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLQErcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKAT 96
69****************************.9***************953432233667****************************** PP
NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
g+dk+v++ k +l+g++ktLvfykgrap+g+ktdW+mheyrle
HL.SW.v1.0.G000619.1 97 GRDKAVYD-KARLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 138
********.999*****************************85 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010200 | Biological Process | response to chitin |
GO:0048759 | Biological Process | xylem vessel member cell differentiation |
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis |
GO:1990110 | Biological Process | callus formation |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 398 aa
Download sequence Send
to blast |
MESMESSSVP PGFRFHPTDE ELVGYYLRKK VASQKIDLDV IRDIDLYRIE PWDLQERCRI 60 GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK AVYDKARLIG MRKTLVFYKG 120 RAPNGQKTDW IMHEYRLESD ENGPPQASIN TYIFESLNEE GWVVCRAFKK RSTSTGQTKT 180 IEGWEPGYLY DEPSAGVSSV AEQIDYISRH NNNPHRHNFL SPPQSFMCKQ ELEADSLLSF 240 NNLLQNNSTN NNNNPADHLL LHHHHHHQFV QQLPQLESPS LPLKRPSSVS ALVSEVVNEE 300 EDQSISHIAK KAVTTTDWRA LDKFVASQLS QDDQEHGDHR NSNQSSSSIF GGSHVQDPET 360 TAFMLLAQSS VDEGNRLNAF LNSSSADCDF GICVFEK*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |