 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
HL.SW.v1.0.G000440.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
| Family |
bHLH |
| Protein Properties |
Length: 382aa MW: 43082.4 Da PI: 7.1144 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| HL.SW.v1.0.G000440.1 | genome | HOPBASE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 36.5 | 8.8e-12 | 194 | 240 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h ++Er+RR+++ ++f L ++P + kK++Ka++L A+ Y+k+Lq
HL.SW.v1.0.G000440.1 194 DHIMAERKRREKLTQRFIALSAIVPGL-----KKMDKASVLGDAIMYVKQLQ 240
699************************.....9******************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 382 aa
Download sequence Send
to blast |
MDVASANWLS EVLGEEDYSS IFHHQYEINS LNQLGIASDD HIIGDNYKQF FSSESYSSYS 60
TITTKTNDPS ITTSSGSDSI KNSHEALNKK LSLSFSSSQL LSFDQKQFSN PPPNNSNLHH 120
HDQKVVYGNL SMSNNTTLRP KREAVPEIDM NFFNKDSLIT KKKDNYSSCE PTTFNKGTNK 180
RPYSMIKTPS HAQDHIMAER KRREKLTQRF IALSAIVPGL KKMDKASVLG DAIMYVKQLQ 240
ERVSVLEEQT KSRTVESVVF KKSQVSADDH NHQGSSSSDQ NFEGRSHHDQ DDHNQTLPEV 300
EARVSEKDVL IRIHCEKQKG IVVKILTEIE ILDHLSVVNT SVLPFGNCTL DITILAQVEK 360
EFSMTMKDLV KNLRKALLKI M*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5gnj_A | 8e-13 | 194 | 249 | 8 | 63 | Transcription factor MYC2 |
| 5gnj_B | 8e-13 | 194 | 249 | 8 | 63 | Transcription factor MYC2 |
| 5gnj_E | 8e-13 | 194 | 249 | 8 | 63 | Transcription factor MYC2 |
| 5gnj_F | 8e-13 | 194 | 249 | 8 | 63 | Transcription factor MYC2 |
| 5gnj_G | 8e-13 | 194 | 249 | 8 | 63 | Transcription factor MYC2 |
| 5gnj_I | 8e-13 | 194 | 249 | 8 | 63 | Transcription factor MYC2 |
| 5gnj_M | 8e-13 | 194 | 249 | 8 | 63 | Transcription factor MYC2 |
| 5gnj_N | 8e-13 | 194 | 249 | 8 | 63 | Transcription factor MYC2 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 198 | 203 | ERKRRE |
| 2 | 199 | 204 | RKRREK |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
