PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.N026500.1
Common NameB456_N026500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 245aa    MW: 28315.9 Da    PI: 8.6815
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.N026500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.73e-11112135326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        +C++++r+G C++Gd C FaHg
  Gorai.N026500.1 112 STICSDYRRGGGCPRGDDCEFAHG 135
                      579********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.09E-7108139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22109137IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6109136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-8110137IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-9112135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4142173IPR000571Zinc finger, CCCH-type
SMARTSM003562.6145168IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.052145169IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MTTVYDPLHH LTSKKLCFKD LEIPPRKKQL HCCHNAASME LPHHEARLHK YLPSNEDDDG  60
TDDPYGTDHF RMYEFKVRRC TRSRSHDWTD CPFAHPGEKA RRRDPIRYQY SSTICSDYRR  120
GGGCPRGDDC EFAHGVFECW LHPTRYRTEA CKDGKNCKRK VCFFAHSSRE LRLLPESPPP  180
LKYKNLDNNY NHCCLFCRSV TSSSSLSPTS TLLGLSHFSR SPSLSPPLSP LGHQQRTPRY  240
GGDRI
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in seeds. {ECO:0000269|PubMed:18487351}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8878950.0AY887895.1 Gossypium hirsutum putative CCCH-type zinc finger transcription factor (ZFP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466480.11e-176PREDICTED: zinc finger CCCH domain-containing protein 2-like, partial
SwissprotQ9ZWA11e-74C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A0D2VM120.0A0A0D2VM12_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.N026500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-49C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]