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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.N024800.1 |
Common Name | B456_N024800 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
HD-ZIP |
Protein Properties |
Length: 131aa MW: 14728.9 Da PI: 10.6075 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.N024800.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 29.7 | 1.1e-09 | 2 | 22 | 36 | 56 |
HCTS-HHHHHHHHHHHHHHHH CS
Homeobox 36 klgLterqVkvWFqNrRakek 56
+l+L rqV +WFqNrRa+++
Gorai.N024800.1 2 QLNLRPRQVEIWFQNRRARKR 22
8******************98 PP
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2 | HD-ZIP_I/II | 80.4 | 2.8e-26 | 2 | 57 | 35 | 91 |
HD-ZIP_I/II 35 eLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+L+l+prqv++WFqnrRAR ++kq+E+d+e+Lkr++d+l+ee +rL+kev+eLr +l
Gorai.N024800.1 2 QLNLRPRQVEIWFQNRRARKRLKQTEVDCEYLKRCCDNLTEESRRLQKEVQELR-AL 57
89***************************************************9.55 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 131 aa
Download sequence Send
to blast |
MQLNLRPRQV EIWFQNRRAR KRLKQTEVDC EYLKRCCDNL TEESRRLQKE VQELRALKLS 60 PQLYTHINPP TTLTMCPSCE RVAVASSSSS SLAASSAPNS KHQRPVPASS WAALPLPVTH 120 RPLNAPASRP *
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By transition from light to far-red light. {ECO:0000269|PubMed:8106086}. |
Publications
? help Back to Top |
- Paterson AH, et al.
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] - Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I
Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development. Plant Signal Behav, 2014. [PMID:23838958] - Francisco M, et al.
Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense. Front Plant Sci, 2016. 7: p. 1010 [PMID:27462337] - Gallemí M, et al.
A non-DNA-binding activity for the ATHB4 transcription factor in the control of vegetation proximity. New Phytol., 2017. 216(3): p. 798-813 [PMID:28805249]
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