PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 131aa MW: 14728.9 Da PI: 10.6075

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.N024800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.7	1.1e-09	2	22	36	56
HCTS-HHHHHHHHHHHHHHHH CS Homeobox 36 klgLterqVkvWFqNrRakek 56 +l+L rqV +WFqNrRa+++ Gorai.N024800.1 2 QLNLRPRQVEIWFQNRRARKR 22 8******************98 PP
2	HD-ZIP_I/II	80.4	2.8e-26	2	57	35	91
HD-ZIP_I/II 35 eLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +L+l+prqv++WFqnrRAR ++kq+E+d+e+Lkr++d+l+ee +rL+kev+eLr +l Gorai.N024800.1 2 QLNLRPRQVEIWFQNRRARKRLKQTEVDCEYLKRCCDNLTEESRRLQKEVQELR-AL 57 89***************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.499	1	24	IPR001356	Homeobox domain
Pfam	PF00046	3.8E-7	2	22	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-8	2	33	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.6E-8	2	27	IPR009057	Homeodomain-like
CDD	cd00086	2.67E-5	2	25	No hit	No description
Pfam	PF02183	3.8E-11	24	58	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	4.8E-24	24	67	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MQLNLRPRQV EIWFQNRRAR KRLKQTEVDC EYLKRCCDNL TEESRRLQKE VQELRALKLS 60 PQLYTHINPP TTLTMCPSCE RVAVASSSSS SLAASSAPNS KHQRPVPASS WAALPLPVTH 120 RPLNAPASRP *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By transition from light to far-red light. {ECO:0000269\|PubMed:8106086}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012466437.1	1e-89	PREDICTED: homeobox-leucine zipper protein HAT3-like
Swissprot	P92953	2e-48	ATHB4_ARATH; Homeobox-leucine zipper protein ATHB-4
TrEMBL	A0A0D2U9C7	4e-88	A0A0D2U9C7_GOSRA; Uncharacterized protein
STRING	Gorai.N024800.1	7e-89	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2577	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44910.1	4e-48	homeobox-leucine zipper protein 4

Link Out ? help Back to Top
Phytozome	Gorai.N024800.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development. Plant Signal Behav, 2014. [PMID:23838958] Francisco M, et al. Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense. Front Plant Sci, 2016. 7: p. 1010 [PMID:27462337] Gallemí M, et al. A non-DNA-binding activity for the ATHB4 transcription factor in the control of vegetation proximity. New Phytol., 2017. 216(3): p. 798-813 [PMID:28805249]