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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.013G268200.1 |
Common Name | B456_013G268200, LOC105781742 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
TCP |
Protein Properties |
Length: 197aa MW: 21060.7 Da PI: 8.746 |
Description |
TCP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.013G268200.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 108.8 | 8.1e-34 | 35 | 110 | 3 | 78 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaess 78
kk++++++h+kv+gRdRR+Rl+ caar+F+L++eLG+++d++ti WLl+qa+p+i ++tgt+ s s + ++
Gorai.013G268200.1 35 NKKTTTKDRHAKVDGRDRRIRLPTVCAARIFQLTRELGLKTDGETIAWLLRQAEPSIVAATGTGVSETSTTpgP--TN 110
59*************************************************************66666555331..11 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 197 aa
Download sequence Send
to blast |
MASSKNMGLE MALSTNPSTK KPRTGSANKA STSKNKKTTT KDRHAKVDGR DRRIRLPTVC 60 AARIFQLTRE LGLKTDGETI AWLLRQAEPS IVAATGTGVS ETSTTPGPTN NNSTNTGLVP 120 FSTGSDSPLA TSDYTPCLTF LQEPDRMLLK NSGDVSRGEP SLPPLEFDFD LEFSAHEMAM 180 FQSVAAAANH DKEGKI*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, roots, and stems. {ECO:0000269|PubMed:19286557}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}. |