PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G265300.2 | ||||||||
Common Name | B456_013G265300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 185aa MW: 21192.6 Da PI: 5.107 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E++l +++++++G++ W++Iar+++ gRt++++k++w++++ Gorai.013G265300.2 2 TPQEEKLVLELHAKWGNR-WSRIARRLP-GRTDNEIKNFWRTHM 43 9*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 3.53E-12 | 1 | 43 | No hit | No description |
SMART | SM00717 | 1.2E-11 | 1 | 45 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.984 | 1 | 47 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.4E-15 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-20 | 2 | 44 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.56E-12 | 2 | 48 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MTPQEEKLVL ELHAKWGNRW SRIARRLPGR TDNEIKNFWR THMRKMALEK KRSTSPSSSS 60 SSTVTRVDSL PSSGTGKVSF YDTGGPKMAV FDDIKGYSMD EIWKDIDMSE GNTTKLPLSE 120 NYSEQGCCNH FSCPSMASSP PWDFSWDYSL WKMDDDDDDD DEEERKVFIA TTNNQLFNLF 180 VHKP* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX616521 | 0.0 | JX616521.1 Gossypium hirsutum clone NBRI_GE61253 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012464122.1 | 1e-134 | PREDICTED: transcription factor MYB59-like | ||||
Swissprot | Q9LX82 | 4e-43 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A0D2VKJ9 | 1e-135 | A0A0D2VKJ9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G265300.1 | 1e-134 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.2 | 2e-42 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G265300.2 |
Publications ? help Back to Top | |||
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