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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.013G265300.1 |
Common Name | B456_013G265300, LOC105783293 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
MYB |
Protein Properties |
Length: 251aa MW: 28997.7 Da PI: 7.5026 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.013G265300.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+ Ed lv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl
Gorai.013G265300.1 11 KGPWTEKEDMVLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 58
79********************************************97 PP
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2 | Myb_DNA-binding | 55.7 | 1.1e-17 | 64 | 109 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T++E++l +++++++G++ W++Iar+++ gRt++++k++w++++
Gorai.013G265300.1 64 RGKMTPQEEKLVLELHAKWGNR-WSRIARRLP-GRTDNEIKNFWRTHM 109
89********************.*********.************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 251 aa
Download sequence Send
to blast |
MEMVKDESCR KGPWTEKEDM VLVNFVHLFG DRRWDFIAKV SGLNRTGKSC RLRWVNYLHP 60 GLKRGKMTPQ EEKLVLELHA KWGNRWSRIA RRLPGRTDNE IKNFWRTHMR KMALEKKRST 120 SPSSSSSSTV TRVDSLPSSG TGKVSFYDTG GPKMAVFDDI KGYSMDEIWK DIDMSEGNTT 180 KLPLSENYSE QGCCNHFSCP SMASSPPWDF SWDYSLWKMD DDDDDDDEEE RKVFIATTNN 240 QLFNLFVHKP *
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1gv2_A | 1e-26 | 11 | 111 | 4 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 4e-26 | 11 | 111 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-26 | 11 | 111 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-26 | 11 | 111 | 4 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 1e-26 | 11 | 111 | 4 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX616521 | 0.0 | JX616521.1 Gossypium hirsutum clone NBRI_GE61253 microsatellite sequence. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Paterson AH, et al.
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Nishida S,Kakei Y,Shimada Y,Fujiwara T
Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana. Plant J., 2017. 91(4): p. 741-753 [PMID:28586097] - Imran QM, et al.
Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes. Sci Rep, 2018. 8(1): p. 771 [PMID:29335449]
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