PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G265200.1 | ||||||||
Common Name | B456_013G265200, LOC105783294 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 170aa MW: 18599.7 Da PI: 8.7171 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00035 | 42 | 64 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k+Fs+ L H +H Gorai.013G265200.1 42 FACKTCDKRFSSFQALGGHRASH 64 78**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 6.0E-12 | 41 | 66 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.3E-9 | 41 | 106 | No hit | No description |
SMART | SM00355 | 0.19 | 42 | 64 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.118 | 42 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.0E-10 | 84 | 107 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.23 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.642 | 84 | 106 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MKRDREDREI EAMAMANCLM LLSKVGQIDP PKHNSIHQRG VFACKTCDKR FSSFQALGGH 60 RASHKKPRFT DADLPASPKK PKIHECSICG LEFPIGQALG GHMRKHRVVS NEGMVVTRPV 120 TEKLNGDDAD NDGGLCLDLK LAPCGIDLDL KLEKAAAPPR MPPVVHLFI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012464123.1 | 1e-122 | PREDICTED: zinc finger protein ZAT12-like | ||||
TrEMBL | A0A0D2U7I5 | 1e-120 | A0A0D2U7I5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G265200.1 | 1e-121 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM531 | 28 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 6e-33 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G265200.1 |
Entrez Gene | 105783294 |
Publications ? help Back to Top | |||
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