PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G254100.4 | ||||||||
Common Name | B456_013G254100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HB-other | ||||||||
Protein Properties | Length: 476aa MW: 53477 Da PI: 8.095 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.3 | 2.6e-18 | 21 | 76 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kRt t+ ql +Lee++++++ ps e++++LA ++gLte+q++ WF+ rR k+k+ Gorai.013G254100.4 21 KKRTFKTPAQLLALEEAYKEQKFPSDEMKARLAVQIGLTEKQISSWFCHRRLKDKR 76 89****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-19 | 4 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.244 | 17 | 77 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-18 | 19 | 81 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-17 | 20 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.13E-16 | 21 | 77 | No hit | No description |
Pfam | PF00046 | 5.6E-16 | 21 | 76 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 52 | 75 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MEDSGEQQTE ENKGSLDVVN KKRTFKTPAQ LLALEEAYKE QKFPSDEMKA RLAVQIGLTE 60 KQISSWFCHR RLKDKRRDES YPNGRQDHSS GVIQDRGSGL RQDSCGSIKQ GDYRNIDLRE 120 VESRRIYGQE FPAADLKYEC RSHQNPYDDR MEDTSSESNL SLNDQPENGA ITQINPRSTK 180 SIGYKPSGYL KVKGEIENSA ITAVKRQLGR HYKEDGPLLG IQFDSLPPGA FEFPSSSPVN 240 EPMYVGDTRQ THSPDTSGVI KQPSNIDSDM EGAKFNTVQG SERRDRKSHH QLKHKSSLDI 300 YNDSTKKSTL TDSKRIKTSS KLAVEKMGSD SFPNHPSPYG MKVSDEQEKP WLHDDDNHTY 360 KAPKNENLSR TSNLIRGYNE SSSTERGSSA RMGKVEKLGG EWKTKKEYPV TVKTNLKNKL 420 RVSKQVNAQH PQQDFAAYAP HARLPLLTNQ TKGSSMDVPS SFSEDETAET DSSSD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 69 | 77 | RRLKDKRRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012464198.1 | 0.0 | PREDICTED: uncharacterized protein LOC105783340 | ||||
Refseq | XP_012464199.1 | 0.0 | PREDICTED: uncharacterized protein LOC105783340 | ||||
TrEMBL | A0A0D2W9F1 | 0.0 | A0A0D2W9F1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G254100.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 8e-76 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G254100.4 |
Publications ? help Back to Top | |||
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