PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YA

Protein Properties

Length: 265aa MW: 28458.5 Da PI: 8.6466

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G251200.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.8	1.6e-32	122	178	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+Il+RRq+Rak+e ekk+ ksrkpylheSRh+hAlrR+RgsgGrF Gorai.013G251200.2 122 QEPVYVNAKQYQGILRRRQARAKAELEKKV-VKSRKPYLHESRHQHALRRARGSGGRF 178 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.8E-35	120	181	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.949	121	181	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	9.7E-29	123	178	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	6.2E-24	124	146	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	126	146	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	6.2E-24	155	178	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0055046	Biological Process	microgametogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MECTNASESN DGQSLSNGAL NEEDDVNKET QTTASSRAVG TGGQEHHNLQ HVGSSMPAVR 60 DEGLTQPPLL ELVGHSIACA SNPYIDPLYG GMMAAYGHQP MGYPPFVGMP HARMTLPIEM 120 AQEPVYVNAK QYQGILRRRQ ARAKAELEKK VVKSRKPYLH ESRHQHALRR ARGSGGRFAK 180 KTDTNPGEEK GSGSGPTLSS QSPSSSGSEP LQTDSNETWT SSLTQHAIHH VNGGSHYQKL 240 GGNISNQAAF YPVNGGQSFQ KLKG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-19	122	178	2	58	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	3e-36	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012463851.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-1 isoform X2
Refseq	XP_012463853.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-1 isoform X2
Swissprot	Q9LXV5	1e-78	NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBL	A0A0D2SI75	0.0	A0A0D2SI75_GOSRA; Uncharacterized protein
TrEMBL	A0A2P0JA29	0.0	A0A2P0JA29_GOSHI; CCAAT binding transcription factor
STRING	Gorai.013G251200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.3	1e-74	nuclear factor Y, subunit A1

Link Out ? help Back to Top
Phytozome	Gorai.013G251200.2
Entrez Gene	105783148

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Siriwardana CL, et al. NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T. PLoS Genet., 2016. 12(12): p. e1006496 [PMID:27977687] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]