PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

EIL

Protein Properties

Length: 364aa MW: 40882.6 Da PI: 9.7863

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G250300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	386.2	4.8e-118	38	304	1	274
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsL 91 +el++rmwkd ++l+r+ker++ + +a++ n+++e arrkk+sraQDgiLk Ml mev+na+GfvYgi+pekgk v+gasd+L Gorai.013G250300.1 38 DELERRMWKDSVRLRRIKERERVAA--Q----QAAELNQTSELARRKKISRAQDGILKNMLMLMEVYNARGFVYGIVPEKGKAVSGASDNL 122 79****************99743..3....3456789************************************************ PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHH CS EIN3 92 raWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwg 182 raWWkekv+fd+ngpaai+ky+a++l++s ++++ ++ + +sl++lqD+t+gSLLs+lmqhcdppqr++plek ++pPWWPtG+e+ww Gorai.013G250300.1 123 RAWWKEKVNFDKNGPAAIVKYEAECLAMSVSDRN--RNGNPCSSLQDLQDATIGSLLSTLMQHCDPPQRKYPLEKRIPPPWWPTGNEDWWV 211 ************************988877..6789999******************************************** PP HHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XXXXXXXX CS EIN3 183 elglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ssslrkqs 271 +lgl++ + ppykkphdlkk+wkv+vLtavikhmsp+i++ir++++qsk+lq k +akes+++l vl++ee++++t s+ s+ + +s Gorai.013G250300.1 212 KLGLQRGDS-PPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVLQSKCLQGKLTAKESAIWLGVLGREEALIRTSSMTkiSRGGHADS 301 *9998.9***************************************************************999886544222233 PP XXX CS EIN3 272 pkv 274 ++v Gorai.013G250300.1 302 NDV 304 333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	2.6E-114	38	282	No hit	No description
Gene3D	G3DSA:1.10.3180.10	2.8E-67	161	289	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamily	SSF116768	2.48E-59	164	285	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MAKLDDTGGD ISWDIEVSEL RRDDMGEEDV SDEEIRADEL ERRMWKDSVR LRRIKERERV 60 AAQQAAELNQ TSELARRKKI SRAQDGILKN MLMLMEVYNA RGFVYGIVPE KGKAVSGASD 120 NLRAWWKEKV NFDKNGPAAI VKYEAECLAM SVSDRNRNGN PCSSLQDLQD ATIGSLLSTL 180 MQHCDPPQRK YPLEKRIPPP WWPTGNEDWW VKLGLQRGDS PPYKKPHDLK KMWKVGVLTA 240 VIKHMSPDIA KIRRHVLQSK CLQGKLTAKE SAIWLGVLGR EEALIRTSSM TKISRGGHAD 300 SNDVVGDQIG SVSSKNGGRN QLTDAEPVAL IGNDDAPLVQ EDVPVEKQSR RKRPRLRSSR 360 GGR*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MAKLDDTGGD ISWDIEVSEL RRDDMGEEDV SDEEIRADEL ERRMWKDSVR LRRIKERERV  60
AAQQAAELNQ TSELARRKKI SRAQDGILKN MLMLMEVYNA RGFVYGIVPE KGKAVSGASD  120
NLRAWWKEKV NFDKNGPAAI VKYEAECLAM SVSDRNRNGN PCSSLQDLQD ATIGSLLSTL  180
MQHCDPPQRK YPLEKRIPPP WWPTGNEDWW VKLGLQRGDS PPYKKPHDLK KMWKVGVLTA  240
VIKHMSPDIA KIRRHVLQSK CLQGKLTAKE SAIWLGVLGR EEALIRTSSM TKISRGGHAD  300
SNDVVGDQIG SVSSKNGGRN QLTDAEPVAL IGNDDAPLVQ EDVPVEKQSR RKRPRLRSSR  360
GGR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wij_A	2e-71	165	288	12	135	ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	350	356	RKRPRLR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269\|PubMed:9215635, ECO:0000269\|PubMed:9851977}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012464525.1	0.0	PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein isoform X1
Swissprot	O23116	1e-144	EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBL	A0A0D2VK29	0.0	A0A0D2VK29_GOSRA; Uncharacterized protein
STRING	Gorai.013G250300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4658	25	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73730.1	1e-144	ETHYLENE-INSENSITIVE3-like 3

Link Out ? help Back to Top
Phytozome	Gorai.013G250300.1
Entrez Gene	105783547

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Frerigmann H,Gigolashvili T Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency. Front Plant Sci, 2014. 5: p. 626 [PMID:25426131] Zheng ZL,Zhang B,Leustek T Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing. Front Plant Sci, 2014. 5: p. 710 [PMID:25566284] Panda SK,Sunkar R Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling. Plant Signal Behav, 2015. 10(4): p. e1010916 [PMID:25912823] Wawrzyńska A,Sirko A EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor. Plant Sci., 2016. 253: p. 50-57 [PMID:27968996]