PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

RAV

Protein Properties

Length: 357aa MW: 40237.1 Da PI: 7.8649

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G249100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	30.3	1.1e-09	46	93	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 +++kGV ++g W A+I+ + +r++lg+f ++ eAa a++ a+ kl+ Gorai.013G249100.1 46 PKFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSESEAAMAYDSAAVKLR 93 69996.666899999......44******88********9998 PP
2	B3	87	1.6e-27	172	268	1	84
EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 f+k+ltpsdv+k++rlv+pkk+a ++ gg+ e+++l+++d+ +W+++++y+k+s+++v+t+GW++Fvk+++L+e Gorai.013G249100.1 172 FQKELTPSDVGKLNRLVIPKKYAVKYfphicetdrqvsaagGGV--EDIELVFYDKLMVTWKFRYCYWKSSQSFVFTRGWSRFVKEKKLNE 260 99***************************9999999976555..789************************************** PP T-EEEEEE CS B3 77 gDfvvFkl 84 +D+v+F+ Gorai.013G249100.1 261 KDTVTFYS 268 ****92 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	9.39E-23	46	104	No hit	No description
Pfam	PF00847	2.0E-4	46	93	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.7E-16	47	102	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	17.016	47	102	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.15E-15	47	103	IPR016177	DNA-binding domain
SMART	SM00380	2.7E-19	47	108	IPR001471	AP2/ERF domain
Gene3D	G3DSA:2.40.330.10	3.1E-31	170	273	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.96E-26	170	272	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.55E-24	171	267	No hit	No description
Pfam	PF02362	1.7E-24	172	268	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.335	172	288	IPR003340	B3 DNA binding domain
SMART	SM01019	7.7E-20	172	277	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MVEDDSSTVL NTKLTVLAAE TSDSGNSGYK FRPGKRSRYD QIGSLPKFKG VVPQQNGHWG 60 AQIYANHQRI WLGTFKSESE AAMAYDSAAV KLRSGDSHRN FPWTEQNIQE PDFQSLYSTE 120 DVLNMIRDGS YQAKFEDFVK ILSKRDGKLN TSNNVNKKLV HGDKQFPCMQ LFQKELTPSD 180 VGKLNRLVIP KKYAVKYFPH ICETDRQVSA AGGGVEDIEL VFYDKLMVTW KFRYCYWKSS 240 QSFVFTRGWS RFVKEKKLNE KDTVTFYSCE CSGEDQNGKS FFLIDVNYNG ENGLGSSAAA 300 LEEEDRRDDD LAVGLEFNSG STTKGYSNKA IEGFENGGRN VKQKSVTLFG VQINLL*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MVEDDSSTVL NTKLTVLAAE TSDSGNSGYK FRPGKRSRYD QIGSLPKFKG VVPQQNGHWG  60
AQIYANHQRI WLGTFKSESE AAMAYDSAAV KLRSGDSHRN FPWTEQNIQE PDFQSLYSTE  120
DVLNMIRDGS YQAKFEDFVK ILSKRDGKLN TSNNVNKKLV HGDKQFPCMQ LFQKELTPSD  180
VGKLNRLVIP KKYAVKYFPH ICETDRQVSA AGGGVEDIEL VFYDKLMVTW KFRYCYWKSS  240
QSFVFTRGWS RFVKEKKLNE KDTVTFYSCE CSGEDQNGKS FFLIDVNYNG ENGLGSSAAA  300
LEEEDRRDDD LAVGLEFNSG STTKGYSNKA IEGFENGGRN VKQKSVTLFG VQINLL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wid_A	2e-26	171	276	13	108	DNA-binding protein RAV1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012461694.1	0.0	PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
Swissprot	Q9C6P5	1e-107	RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBL	A0A0D2U6M7	0.0	A0A0D2U6M7_GOSRA; Uncharacterized protein
STRING	Gorai.013G249100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1705	27	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	1e-109	RAV family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G249100.1
Entrez Gene	105781732

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]