PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G242800.2
Common NameB456_013G242800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 174aa    MW: 19751.2 Da    PI: 4.6402
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G242800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.4e-1358100754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  Gorai.013G242800.2  58 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 100
                         67*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.2451100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-1852115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.90E-1455104No hitNo description
SMARTSM003532.7E-1557106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1757115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-1158100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MLAMENIENI GDEYKNYWET KYFLENEEYS WPIDEFSGYY DSSSPDGAAS SVAAKNIVSE  60
RNRRKKLNER LFALRAVVPN ISKMDKASII KDAIDYIQEL HDQEGRIQAE ISELESGKLK  120
KNPGFEYDQE LPGLRSKKTK LDNIFDYGGS RACPIEVLEV HSPTPPSLSP CFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-1556133980Transcription factor MYC2
5gnj_B5e-1556133980Transcription factor MYC2
5gnj_E5e-1556133980Transcription factor MYC2
5gnj_F5e-1556133980Transcription factor MYC2
5gnj_G5e-1556133980Transcription factor MYC2
5gnj_I5e-1556133980Transcription factor MYC2
5gnj_M5e-1556133980Transcription factor MYC2
5gnj_N5e-1556133980Transcription factor MYC2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463465.11e-114PREDICTED: transcription factor bHLH35-like
SwissprotQ700E31e-48BH027_ARATH; Transcription factor bHLH27
TrEMBLA0A0D2U6911e-125A0A0D2U691_GOSRA; Uncharacterized protein
STRINGGorai.013G242800.11e-114(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.45e-52bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]