PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G229000.1
Common NameB456_013G229000, LOC105783107
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 333aa    MW: 36997.6 Da    PI: 7.1561
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G229000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.4e-08125145526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C++f++ G C+ Gd+C FaHg
  Gorai.013G229000.1 125 ACSDFRK-GNCRKGDSCEFAHG 145
                         7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.3E-6120146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.488121147IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-6125145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5125147IPR000571Zinc finger, CCCH-type
SMARTSM0035616155178IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.812155179IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MVGETGQLNP TVHVPPWPYV SDDLTAEDNF SDNGNPFYLQ EALAALQCFL PSDELGFESD  60
SEILSLYNPD SPVDAYSCDH FRMFEFKVRR CGRGRSHDWT ECPYAHPGEK ARRRDPRKFH  120
YSGTACSDFR KGNCRKGDSC EFAHGVFECW LHPARYRTLP CKDGSGCRRR VCFFAHTPDQ  180
LRVVNFADSY DSSPPCTKAM PFSGSPRAES SPPVSPMSQS PTMNTMVASL RNLQLGKVKS  240
LPSSGCGSPR GSMIRPILSS LPSTPTRNLT RPGIGYLDFG CGEEPVMERV ESGKHLRSKM  300
FEKLSQENSL ERVYLGRVSG GPDVDWVSDL VN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463774.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-123C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A0D2U5R20.0A0A0D2U5R2_GOSRA; Uncharacterized protein
TrEMBLA0A2P5RH120.0A0A2P5RH12_GOSBA; Uncharacterized protein
STRINGGorai.013G229000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-123C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  3. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]