PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G210600.1

Common Name

B456_013G210600, LOC105784177

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 164aa MW: 18815 Da PI: 10.6348

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G210600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	31.8	1.9e-10	11	50	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r++t+ +R + + KK EL +LC++e ++ s+ Gorai.013G210600.1 11 ITNDSARKTTYKRRTKCLVKKVRELTTLCGIEGFAVMNSP 50 89*****************************987777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	13.54	1	49	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.1E-12	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.06E-18	3	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.01E-17	3	86	No hit	No description
Pfam	PF00319	3.9E-11	11	51	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MSRKKIKLAY ITNDSARKTT YKRRTKCLVK KVRELTTLCG IEGFAVMNSP DFGSQVEVWP 60 SLEDARRLLS DFKKLPLSKQ NKKMVSQESF LEQSLAKATQ QLRKLREKNR QKELKEVMFE 120 SLSGKGILQS LNAMDLDEVD LLVKQNLTDI DYRVRVLTKA SRS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243101	1e-77	AC243101.1 Gossypium arboreum clone GM203N05-jhe, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465435.1	1e-115	PREDICTED: agamous-like MADS-box protein AGL80
TrEMBL	A0A0D2W832	1e-114	A0A0D2W832_GOSRA; Uncharacterized protein
STRING	Gorai.013G210600.1	1e-114	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	2e-44	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Gorai.013G210600.1
Entrez Gene	105784177

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]