PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G210400.1
Common NameB456_013G210400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 152aa    MW: 17443.6 Da    PI: 10.9243
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G210400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.77.1e-141151343
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        i n+s+r++t+ k  +g+ KK +EL +LC++e + ii s++
  Gorai.013G210400.1 11 ITNDSKRKTTYKKSTKGLVKKVHELTTLCGIETCAIIHSPD 51
                        89************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554559.42E-18175IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.026149IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-13161IPR002100Transcription factor, MADS-box
CDDcd002661.33E-18380No hitNo description
PRINTSPR004043.5E-6323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-131151IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MSRKKMKLAY ITNDSKRKTT YKKSTKGLVK KVHELTTLCG IETCAIIHSP DFDSQPEVWL  60
SHAGARRLLS EFKKLPRFLE QSIAKATRQL RKLCKENRQT ELKKVMFQSL SGKVIFQSLN  120
AMDLNEVGLF VKQNLKDIND RVRVLTKASR F*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016675516.16e-90PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK35e-45AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0D2U4N51e-107A0A0D2U4N5_GOSRA; Uncharacterized protein
STRINGGorai.013G210400.11e-108(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-42AGAMOUS-like 80
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]