PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G210000.5
Common NameB456_013G210000, LOC105783743
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 310aa    MW: 35065 Da    PI: 6.8101
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G210000.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035161185123
                         EEETTTTEEESSHHHHHHHHHH..T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                         + C+ C+k ++  +++++H+++  H
  Gorai.013G210000.5 161 FYCELCNKQYKLAMEFEVHLSSydH 185
                         79*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004438.5E-1764109IPR000467G-patch domain
PROSITE profilePS5017416.47766111IPR000467G-patch domain
PfamPF015851.7E-1567107IPR000467G-patch domain
PfamPF121712.1E-5161188IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280163185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDYRRYNSSQ GANLGTKQQI SEEQAYQDSL VEDLAEDFRL PINHKPTENV DLDNVQQATL  60
DTKLNSSNVG FRLLQKMGWK GKGLGKDEQG IIEPIRSGIR DPKLGIGKQE EDDFFTAEEN  120
IQRRKLDIEV EETEEHAKKR EVLAEREQKI QTEVKEIRKV FYCELCNKQY KLAMEFEVHL  180
SSYDHNHRKR FKEMREMHGS SSRDDRQKRE QQRQEREMAK FAQMAGARKQ QQQESREESG  240
PATAPASSPA PAPAPAPAIA TALADQEQRK TLKFGFSSKS SSSKNASGSA VKKPKVAVAS  300
VFGNDSDDE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464822.10.0PREDICTED: G patch domain-containing protein 8
TrEMBLA0A0D2W8260.0A0A0D2W826_GOSRA; Uncharacterized protein
STRINGGorai.013G210000.10.0(Gossypium raimondii)
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]