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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G210000.3 | ||||||||
Common Name | B456_013G210000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 229aa MW: 27001.2 Da PI: 6.2748 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 161 | 185 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C+ C+k ++ +++++H+++ H Gorai.013G210000.3 161 FYCELCNKQYKLAMEFEVHLSSydH 185 79*****************987666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00443 | 8.5E-17 | 64 | 109 | IPR000467 | G-patch domain |
PROSITE profile | PS50174 | 16.477 | 66 | 111 | IPR000467 | G-patch domain |
Pfam | PF01585 | 1.1E-15 | 67 | 107 | IPR000467 | G-patch domain |
SuperFamily | SSF57667 | 4.62E-5 | 147 | 189 | No hit | No description |
Pfam | PF12171 | 1.4E-5 | 161 | 188 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 163 | 185 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MDYRRYNSSQ GANLGTKQQI SEEQAYQDSL VEDLAEDFRL PINHKPTENV DLDNVQQATL 60 DTKLNSSNVG FRLLQKMGWK GKGLGKDEQG IIEPIRSGIR DPKLGIGKQE EDDFFTAEEN 120 IQRRKLDIEV EETEEHAKKR EVLAEREQKI QTEVKEIRKV FYCELCNKQY KLAMEFEVHL 180 SSYDHNHRKR FKEMREMHGS SSRDDRQKRE QQRQEREMAK FAQMYLIN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012464822.1 | 1e-167 | PREDICTED: G patch domain-containing protein 8 | ||||
TrEMBL | A0A0D2SHM2 | 1e-168 | A0A0D2SHM2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G210000.1 | 1e-166 | (Gossypium raimondii) |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G210000.3 |
Publications ? help Back to Top | |||
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