PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G204300.1 | ||||||||
Common Name | B456_013G204300, LOC105781139 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 288aa MW: 32380.7 Da PI: 8.4621 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.6 | 2.2e-13 | 104 | 155 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i A++++k+L+ Gorai.013G204300.1 104 QRMTHITVERNRRKQMNQYLSLLRSLMPPS---YAQRGDQASIIGGAINFVKELE 155 79****************************...*******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.91E-12 | 102 | 159 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.0E-13 | 102 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-16 | 102 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.091 | 103 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-10 | 104 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-8 | 109 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MAMEAVIFQQ DWFGYNGKDV LLGGNWSYGL GLGKEEEKFC FEHIPGNQTS DTNNLVDGDH 60 RVSSSSQTSM APPLPHSSGP SAMGRRKRRR STKAPKNKEE MENQRMTHIT VERNRRKQMN 120 QYLSLLRSLM PPSYAQRGDQ ASIIGGAINF VKELEQRLQW LSGQKEVKEE TPKFDDFFTS 180 PQYSTPIGDI EVNVNERHAN LKIRWKRRPS LLFRLVSGLN AMRLTILHLN VTTAALIVLY 240 SLTLKVEDDC KLTTGDGIAS AVNQLLCRNE GDDGDDAMFN SFNSILP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 89 | RKRRR |
2 | 85 | 90 | RKRRRS |
3 | 104 | 115 | RMTHITVERNRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX617793 | 8e-59 | JX617793.1 Gossypium hirsutum clone NBRI_GE63038 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012461161.1 | 0.0 | PREDICTED: transcription factor bHLH94-like | ||||
Swissprot | Q9SK91 | 4e-64 | BH094_ARATH; Transcription factor bHLH94 | ||||
TrEMBL | A0A0D2VI30 | 0.0 | A0A0D2VI30_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G204300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1116 | 27 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22490.1 | 2e-66 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G204300.1 |
Entrez Gene | 105781139 |
Publications ? help Back to Top | |||
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