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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.013G204200.1 |
Common Name | B456_013G204200 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
RAV |
Protein Properties |
Length: 335aa MW: 38083.1 Da PI: 9.0924 |
Description |
RAV family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.013G204200.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 35.8 | 2e-11 | 39 | 86 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
s+ykGV + k +g+W A+++ n ++r++lg+f ++ +Aa a++ a+ k++
Gorai.013G204200.1 39 SQYKGVMRQK-NGQWGAQLYT---N--HTRIWLGTFKSEIDAAMAYDSAAIKFR 86
78****8676.8******655...3..5**********99**********9987 PP
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2 | B3 | 81.1 | 1.1e-25 | 158 | 255 | 1 | 84 |
EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77
f+k+ltpsdv++++rlv+pkk+a ++ g+ k+++++l+++d+ r W+++++y+++s+++v+t+GW++F k+++Lk++
Gorai.013G204200.1 158 FQKELTPSDVGQLNRLVIPKKYAVKYfppvsgtekenadvGHRKTNDVELIFYDKFMRIWKFRYCYWNSSQSFVFTRGWNRFLKEKELKAN 248
99*******************************999999999999********************************************** PP
-EEEEEE CS
B3 78 DfvvFkl 84
D+v F +
Gorai.013G204200.1 249 DVVSFFV 255
****974 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 335 aa
Download sequence Send
to blast |
MSSVILSGEA NINSDVSDST STTHQANKRQ RCGGKGNSSQ YKGVMRQKNG QWGAQLYTNH 60 TRIWLGTFKS EIDAAMAYDS AAIKFRTGDT HRNFPWNEIT IEEPTFLSHY SAEAVLSMIR 120 DGSYQYKFMD FIKAHSGNTK LNLVGTYSNE GLICKQLFQK ELTPSDVGQL NRLVIPKKYA 180 VKYFPPVSGT EKENADVGHR KTNDVELIFY DKFMRIWKFR YCYWNSSQSF VFTRGWNRFL 240 KEKELKANDV VSFFVCECRK ENEVRRFCMI DANKSGNGGT FVSANNVHVG IEVDLQLRLG 300 HCYLVQEEQG SMAAAKPKQD DKTEGFKLFG MQIS*
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX614752 | 5e-51 | JX614752.1 Gossypium hirsutum clone NBRI_GE58377 microsatellite sequence. |