PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

RAV

Protein Properties

Length: 349aa MW: 39851.1 Da PI: 9.0647

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G204000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32.2	2.7e-10	43	90	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 s++kGV + k +g+W A+++ n ++r++lg+f t+ +Aa a++ a k++ Gorai.013G204000.1 43 SQFKGVMRQK-NGQWGAQLYT---N--HTRIWLGTFKTEIDAAVAYDSAVIKFR 90 789*8666.8**655...3..5******99******998876 PP
2	B3	81.9	6.2e-26	166	263	1	84
EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+k+ltpsdv+k++rlv+pkk+a ++ g k+++++l+++d+ r W+++++y+++s+++v+t+GW++F k+++Lk++ Gorai.013G204000.1 166 FQKELTPSDVGKLNRLVIPKKYAVKYfppvswtekenadiGDRKTNHVELVFYDKFMRIWKFRYCYWNSSQSFVFTRGWNRFLKEKELKAN 256 99************************************88999****************************************** PP -EEEEEE CS B3 78 DfvvFkl 84 D+v F + Gorai.013G204000.1 257 DVVSFFV 263 **974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	2.68E-14	43	100	IPR016177	DNA-binding domain
CDD	cd00018	3.44E-19	43	99	No hit	No description
PROSITE profile	PS51032	16.845	44	99	IPR001471	AP2/ERF domain
SMART	SM00380	8.1E-17	44	105	IPR001471	AP2/ERF domain
Pfam	PF00847	2.3E-5	44	88	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.1E-16	44	100	IPR001471	AP2/ERF domain
Gene3D	G3DSA:2.40.330.10	1.8E-30	162	273	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.53E-26	165	267	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.33E-23	165	261	No hit	No description
SMART	SM01019	9.0E-21	166	281	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.6E-23	166	263	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.069	166	281	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MEEEILSVIS SGEANTNSDV SDSISTTHQA NKSQRCGSKG NSSQFKGVMR QKNGQWGAQL 60 YTNHTRIWLG TFKTEIDAAV AYDSAVIKFR PGDTHRNFPR NEITIEEPKL LSHYSAEAAL 120 SMIRDGSSQY KFMDFIKARS RSIKPSIALN SVETYSNEGL ICKQLFQKEL TPSDVGKLNR 180 LVIPKKYAVK YFPPVSWTEK ENADIGDRKT NHVELVFYDK FMRIWKFRYC YWNSSQSFVF 240 TRGWNRFLKE KELKANDVVS FFVCECRKEN EVRRFCMIDA NKSGNGGTFV AVNTVHVGIE 300 VDLQLRLGHY YPIGDEKHVQ EEQGSMATAK QKQDDKTEGF KLFGMQIN*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MEEEILSVIS SGEANTNSDV SDSISTTHQA NKSQRCGSKG NSSQFKGVMR QKNGQWGAQL  60
YTNHTRIWLG TFKTEIDAAV AYDSAVIKFR PGDTHRNFPR NEITIEEPKL LSHYSAEAAL  120
SMIRDGSSQY KFMDFIKARS RSIKPSIALN SVETYSNEGL ICKQLFQKEL TPSDVGKLNR  180
LVIPKKYAVK YFPPVSWTEK ENADIGDRKT NHVELVFYDK FMRIWKFRYC YWNSSQSFVF  240
TRGWNRFLKE KELKANDVVS FFVCECRKEN EVRRFCMIDA NKSGNGGTFV AVNTVHVGIE  300
VDLQLRLGHY YPIGDEKHVQ EEQGSMATAK QKQDDKTEGF KLFGMQIN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wid_A	8e-28	162	261	10	100	DNA-binding protein RAV1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX614752	5e-76	JX614752.1 Gossypium hirsutum clone NBRI_GE58377 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012461659.1	0.0	PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
Swissprot	Q9C6P5	7e-91	RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBL	A0A0D2VJC4	0.0	A0A0D2VJC4_GOSRA; Uncharacterized protein
STRING	Gorai.013G204000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15647	6	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	3e-93	RAV family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G204000.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]