PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G172800.2 | ||||||||
Common Name | B456_013G172800, LOC105783160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 410aa MW: 44213.7 Da PI: 7.3274 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.8 | 2.4e-35 | 36 | 136 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssasec...eaesssssasn 84 g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai+el+++ + ++ +++++++n Gorai.013G172800.2 36 GRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDELAELppwnpqT------LtttTSTTKQNNQQN 120 89*************************************************************5544330......232222233333333 PP TCP 85 sssg...........k 89 +++ + Gorai.013G172800.2 121 QNIItavdnekprrtA 136 3333445444333330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-32 | 36 | 137 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.187 | 37 | 95 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MGESNHQAAT SSRLGLKHSG GEIVEVQGGH IVRSIGRKDR HSKVCTAKGP RDRRVRLSAH 60 TAIQFYDVQD RLGYDRPSKA VDWLIKKAKS AIDELAELPP WNPQTLTTTT STTKQNNQQN 120 QNIITAVDNE KPRRTATLMG NQVQILQQQG TGDNPNSNSG FLPSSLVSDE IADTMKSSFP 180 LGASSEAPSS SIQFQNYPPD FLSKTSSHSQ DLRLSLQSFP EPVLLHHHHQ AAAAQAHQTE 240 SVLFSAGTSP LAGFDGSSAG WENHHHHPAE VGRLQRLVAW NNGAAAADTG SGGGGGMGGF 300 LFGNLSAPPL SPAFGQNGQF FFQRGPLQSS NTPLVRAWID QPIPTTDEYH HHHHQIPQNI 360 HHQPALSGIE FTTSGVFSGF RVPARFQGAQ EDQDSIANKL SSASSDSHH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-21 | 42 | 95 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 7e-21 | 42 | 95 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.1195 | 0.0 | flower| flowering |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledons during embryogenesis. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX964129 | 1e-129 | JX964129.1 Gossypium hirsutum clone NBRI_TRANS-398 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012463886.1 | 0.0 | PREDICTED: transcription factor TCP4-like | ||||
Refseq | XP_012463887.1 | 0.0 | PREDICTED: transcription factor TCP4-like | ||||
Refseq | XP_012463888.1 | 0.0 | PREDICTED: transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 1e-108 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A0D2W706 | 0.0 | A0A0D2W706_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G172800.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 1e-98 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G172800.2 |
Entrez Gene | 105783160 |