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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G164100.2 | ||||||||
Common Name | B456_013G164100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 238aa MW: 26229.6 Da PI: 6.2945 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.1 | 9.7e-11 | 77 | 124 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++f eL +l + + +K +K++iL Av+ + +L Gorai.013G164100.2 77 SKACREKLRRDRLNDKFMELGAILEPG---RPPKTDKSAILVDAVRMVTQL 124 5678**********************8...89**************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.23E-13 | 64 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.455 | 73 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.33E-8 | 76 | 129 | No hit | No description |
Pfam | PF00010 | 2.0E-8 | 77 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-12 | 77 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-8 | 79 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:1.20.5.170 | 4.4E-4 | 138 | 172 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MVPPENPSYW SHFDYSTLID DIPVPDGPYT GFSWSTQPTN APSTAVNVEV DNSFGDLDGL 60 TESGSKKRSE SCNPSSSKAC REKLRRDRLN DKFMELGAIL EPGRPPKTDK SAILVDAVRM 120 VTQLRDEAQK MKDSNSSLQE RIKELKAEKN ELREEKQRLK AEKEKLEQQL KTMNAQPSFM 180 PPAPAIPSAF AAAAAQGQAH GNKLVPFFGY PGVAMWQFMP PAAVDTSQDH VLRPPVA* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012463784.1 | 1e-162 | PREDICTED: transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 1e-102 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A0D2VEL8 | 1e-175 | A0A0D2VEL8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G164100.1 | 1e-161 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 2e-76 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G164100.2 |