PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 522aa MW: 57954.3 Da PI: 7.1018

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G159200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.8	3.3e-15	23	70	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed l+++v+ +G g+W+++ r g+ R++k+c++rw ++l Gorai.013G159200.1 23 KGPWTAAEDAVLAEYVRTHGEGNWNAVQRNTGLARCGKSCRLRWANHL 70 79******************************************9986 PP
2	Myb_DNA-binding	48.2	2.5e-15	76	119	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ ++v++++ +G++ W++ a++++ gRt++++k++w++ Gorai.013G159200.1 76 KGAFSPEEERIIVELHAIMGNK-WARMAARLP-GRTDNEIKNYWNT 119 799*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.338	18	70	IPR017930	Myb domain
SuperFamily	SSF46689	1.37E-28	21	117	IPR009057	Homeodomain-like
SMART	SM00717	4.6E-12	22	72	IPR001005	SANT/Myb domain
Pfam	PF00249	8.1E-14	23	70	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.3E-23	24	77	IPR009057	Homeodomain-like
CDD	cd00167	7.75E-10	25	70	No hit	No description
PROSITE profile	PS51294	24.88	71	125	IPR017930	Myb domain
SMART	SM00717	6.8E-16	75	123	IPR001005	SANT/Myb domain
Pfam	PF00249	4.1E-14	76	119	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-24	78	124	IPR009057	Homeodomain-like
CDD	cd00167	2.66E-11	78	119	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence Send to blast
MMGNNNNNHQ VSMQKEEGVM LKKGPWTAAE DAVLAEYVRT HGEGNWNAVQ RNTGLARCGK 60 SCRLRWANHL RPNLKKGAFS PEEERIIVEL HAIMGNKWAR MAARLPGRTD NEIKNYWNTR 120 VKRRQRQGLP LYPPEIQSLY SQTQPVLTPP STSSFSFQHS TTMLTSSSPS PPPRLLSYDP 180 HSTATPPPVQ SPSPASTPPP LPSPSHVSPL QSPHKPSFSS IPLADSFTSN TPSSSLDFYF 240 PRPLPSLEQP LRNKRPRHDE NNTNNGGSSF MLPFSSLMKT DPFNPHTVTN NSLNPQHYSN 300 SYCLDQTTFD MASSSRFLQP HFDPGQFIST PRFGYNQLKT ELPSNQIFTQ DGNSQVRFDP 360 KGNNNYSSHN QIQNSNHHSS GLNISGNGLV EDMLQEVQAL NEKNEIMASQ SCLVRPSSSS 420 EGLASGLEAK EESKEQIMNT TKHVDYSHVN PSSMAMAIPE WYINNGESSI GQSSTVTYDD 480 LALEFELHDQ IASLLPIDTA PDHHGRSSSS YTWVHSFPGI C*

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence Send to blast

MMGNNNNNHQ VSMQKEEGVM LKKGPWTAAE DAVLAEYVRT HGEGNWNAVQ RNTGLARCGK  60
SCRLRWANHL RPNLKKGAFS PEEERIIVEL HAIMGNKWAR MAARLPGRTD NEIKNYWNTR  120
VKRRQRQGLP LYPPEIQSLY SQTQPVLTPP STSSFSFQHS TTMLTSSSPS PPPRLLSYDP  180
HSTATPPPVQ SPSPASTPPP LPSPSHVSPL QSPHKPSFSS IPLADSFTSN TPSSSLDFYF  240
PRPLPSLEQP LRNKRPRHDE NNTNNGGSSF MLPFSSLMKT DPFNPHTVTN NSLNPQHYSN  300
SYCLDQTTFD MASSSRFLQP HFDPGQFIST PRFGYNQLKT ELPSNQIFTQ DGNSQVRFDP  360
KGNNNYSSHN QIQNSNHHSS GLNISGNGLV EDMLQEVQAL NEKNEIMASQ SCLVRPSSSS  420
EGLASGLEAK EESKEQIMNT TKHVDYSHVN PSSMAMAIPE WYINNGESSI GQSSTVTYDD  480
LALEFELHDQ IASLLPIDTA PDHHGRSSSS YTWVHSFPGI C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	9e-31	21	124	5	107	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX614603	1e-132	JX614603.1 Gossypium hirsutum clone NBRI_GE58120 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465976.1	0.0	PREDICTED: transcription factor MYB28-like
TrEMBL	A0A0D2VED2	0.0	A0A0D2VED2_GOSRA; Uncharacterized protein
STRING	Gorai.013G159200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	1e-69	myb domain protein 101

Link Out ? help Back to Top
Phytozome	Gorai.013G159200.1
Entrez Gene	105784623

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]