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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G143100.1 | ||||||||
Common Name | B456_013G143100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 244aa MW: 28381.7 Da PI: 6.4015 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.5 | 3.5e-14 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ +Ed++l+ +++++G +W+ +r g+ R++k+c++rw +yl Gorai.013G143100.1 9 KGSWSRDEDQKLIAYITRYGIWNWNEMPRFAGLQRSGKSCRLRWVNYL 56 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 62 | 105 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ eE+e ++++ k lG++ W++Ia++++ Rt++++k++w++ Gorai.013G143100.1 62 RGNFSREEEETIIHLQKTLGNR-WSAIAARLP-QRTDNDIKNYWNS 105 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.461 | 4 | 56 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.55E-27 | 7 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.5E-10 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-11 | 9 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-21 | 10 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.56E-8 | 11 | 56 | No hit | No description |
PROSITE profile | PS51294 | 23.725 | 57 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 5.4E-14 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-14 | 62 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-9 | 64 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-24 | 64 | 111 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MVRQPYLKKG SWSRDEDQKL IAYITRYGIW NWNEMPRFAG LQRSGKSCRL RWVNYLRPNI 60 RRGNFSREEE ETIIHLQKTL GNRWSAIAAR LPQRTDNDIK NYWNSRLKKR VIVENNNSAS 120 SPTETKSKTK SSVEENSSDA DSSMMLGIFL DSDTRGMHDF AEIAADTTFF PSGSDPSVAV 180 DDHYSMAMDN YLVSYWEILS FLEQPQMIEG LDCEAISQNS QQWHSHHQQY YDPLHDFWVN 240 PLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-27 | 5 | 111 | 3 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016675131.1 | 1e-171 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A0D2SDZ8 | 0.0 | A0A0D2SDZ8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G143100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17382 | 4 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 2e-48 | MYB-like 102 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G143100.1 |
Publications ? help Back to Top | |||
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