PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G143000.1 | ||||||||
Common Name | B456_013G143000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 28141.6 Da PI: 6.0382 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.6 | 2.1e-11 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+ +Ed +l+ ++ ++G +W+ +++ g+ R++k+ ++rw +yl Gorai.013G143000.1 9 KGTWSRDEDHKLIAYIVRYGIWNWNEMPKHAGLQRSGKSSRLRWMNYL 56 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.1e-16 | 62 | 105 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T eE+e +v++ k lG++ W++Ia++++ Rt++++k++w++ Gorai.013G143000.1 62 RGNFTREEEETIVRLQKILGNR-WSAIAARLP-QRTDNDIKNYWNT 105 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 10.313 | 4 | 56 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 7.65E-25 | 7 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-6 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-9 | 9 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-19 | 10 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.50E-6 | 11 | 56 | No hit | No description |
PROSITE profile | PS51294 | 24.548 | 57 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-14 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-14 | 62 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.19E-10 | 64 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.7E-25 | 64 | 111 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MVRQPYLKKG TWSRDEDHKL IAYIVRYGIW NWNEMPKHAG LQRSGKSSRL RWMNYLRPNI 60 RRGNFTREEE ETIVRLQKIL GNRWSAIAAR LPQRTDNDIK NYWNTRLKKR VISENKNSTA 120 ATTSTKETNS SMMENSSDAD SSSMLTNILL DSPVSTIDDL LEPPAYSCFS PSGSDLVAVD 180 DKYSMSTDNF LVSCWETQSY LEQPQMIEGL DWEAVLPNSE LWHSHHQQCY DPLDDFWINP 240 LI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-26 | 5 | 111 | 3 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016704182.1 | 1e-178 | PREDICTED: transcription factor WER-like | ||||
Swissprot | Q7XBH4 | 1e-46 | MYB4_ORYSJ; Transcription factor MYB4 | ||||
TrEMBL | A0A0D2VDR1 | 1e-180 | A0A0D2VDR1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G143000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17382 | 4 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G05100.1 | 1e-47 | myb domain protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G143000.1 |
Publications ? help Back to Top | |||
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