PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G138300.3

Common Name

B456_013G138300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 227aa MW: 24595.4 Da PI: 8.0445

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G138300.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.6	1.7e-06	195	220	6	30
HHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 6 nerErrRRdriNsafeeLrellPk.a 30 +++Er RR ri +++ +L+el+P+ + Gorai.013G138300.3 195 SIAERVRRTRISDRIRKLQELVPNmD 220 689********************955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.89	189	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.76E-6	192	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.36E-5	193	224	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.5E-5	194	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042335	Biological Process	cuticle development
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MKPTPGGSSS SSGGGAEGSR AGLARFRSAP ATWLEALLEE EEEDPLKPSQ CLTQLLTGNS 60 TSTPTIRNSL LFPNSAYPSG LFEPSGFQRQ NSSPADFPGN NPAASSDAYF SNFGVVANYD 120 YLSPTMDVSP SSKRASELDT QFPPTKFHSQ LKGEPSDQIS GGISNLIDVD MEKLLEDSVP 180 CRVRAKRGCA THPRSIAERV RRTRISDRIR KLQELVPNMD KIKRYP*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00181	DAP	Transfer from AT1G35460	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016703650.1	1e-166	PREDICTED: transcription factor bHLH81-like isoform X3
Swissprot	Q9C8P8	2e-73	BH080_ARATH; Transcription factor bHLH80
TrEMBL	A0A1U8KMI6	1e-164	A0A1U8KMI6_GOSHI; transcription factor bHLH81-like isoform X3
STRING	Gorai.013G138300.1	1e-161	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35460.1	8e-64	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G138300.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]