PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G138300.2 | ||||||||
Common Name | B456_013G138300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 24723.6 Da PI: 8.0445 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.4 | 1.9e-06 | 195 | 220 | 6 | 30 |
HHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 6 nerErrRRdriNsafeeLrellPk.a 30 +++Er RR ri +++ +L+el+P+ + Gorai.013G138300.2 195 SIAERVRRTRISDRIRKLQELVPNmD 220 689********************955 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.086 | 189 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.97E-6 | 192 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.26E-4 | 193 | 224 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.9E-5 | 194 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MKPTPGGSSS SSGGGAEGSR AGLARFRSAP ATWLEALLEE EEEDPLKPSQ CLTQLLTGNS 60 TSTPTIRNSL LFPNSAYPSG LFEPSGFQRQ NSSPADFPGN NPAASSDAYF SNFGVVANYD 120 YLSPTMDVSP SSKRASELDT QFPPTKFHSQ LKGEPSDQIS GGISNLIDVD MEKLLEDSVP 180 CRVRAKRGCA THPRSIAERV RRTRISDRIR KLQELVPNMD KQIKRYP* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00181 | DAP | Transfer from AT1G35460 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016703649.1 | 1e-167 | PREDICTED: transcription factor bHLH81-like isoform X2 | ||||
Swissprot | Q9C8P8 | 3e-74 | BH080_ARATH; Transcription factor bHLH80 | ||||
TrEMBL | A0A1U8KSG4 | 1e-166 | A0A1U8KSG4_GOSHI; transcription factor bHLH81-like isoform X2 | ||||
STRING | Gorai.013G138300.1 | 1e-162 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35460.1 | 1e-64 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G138300.2 |
Publications ? help Back to Top | |||
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