PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G098600.6 | ||||||||
Common Name | B456_013G098600, LOC105782938 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 556aa MW: 59113.3 Da PI: 5.712 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.1 | 7.3e-09 | 372 | 420 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Gorai.013G098600.6 372 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 420 58*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.89E-17 | 367 | 437 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.69E-11 | 367 | 424 | No hit | No description |
PROSITE profile | PS50888 | 15.478 | 369 | 419 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.6E-17 | 370 | 437 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.9E-6 | 372 | 420 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.5E-10 | 375 | 425 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 556 aa Download sequence Send to blast |
MDVGEKDKYE LEKRNDNSLN YQASSMSSAW QFGGSNLTST PMSLVSSDNP LVIGSSSASA 60 SMGDSFCSNL WEHPSNSQNL GFCDINVQNG ASSSNAMGIG RGGPASVRGS IDRPFEMGWN 120 ASSSMLKGGI FLPNASGVLP SSLSQLPTDS AFIERAAKFS SFNGGNFSDI VNPFGIPEAM 180 GVYARGVGLM QGPQDVYTIS GIKSISGVES QRSKLITTEA SRDLPAENRA TQESPLKNER 240 NGGSLVRSNE EAKQGNGGSG NESNEAESSG GAGGHDEPSA LDGTAGESSA KILSSKKRKR 300 SVQEAEVDQA KGSQSPVEAT KDGAENQQKV DQNQTTMVNK TTAKHGKQGS QASDPPKEEY 360 IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ 420 RQVEFLSMKL ATVNPRVDCN IEGLLAKDII QSRAGPSTLG FSPDLSVGYP PLHPSQPGLG 480 PGGFPVMENN ADIIRRTLSS HFTPMTGGFK EPNQLSNAWE DELHNVVQMN YGTSTASDSQ 540 EVNGSQPSGH TKVEL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 295 | 300 | KKRKRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146811 | 9e-91 | EF146811.1 Populus trichocarpa clone WS01214_F06 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012463497.1 | 0.0 | PREDICTED: transcription factor bHLH49 | ||||
Refseq | XP_012463498.1 | 0.0 | PREDICTED: transcription factor bHLH49 | ||||
Refseq | XP_012463499.1 | 0.0 | PREDICTED: transcription factor bHLH49 | ||||
Refseq | XP_012463500.1 | 0.0 | PREDICTED: transcription factor bHLH49 | ||||
TrEMBL | A0A0D2SBD4 | 0.0 | A0A0D2SBD4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G098600.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 1e-126 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G098600.6 |
Entrez Gene | 105782938 |
Publications ? help Back to Top | |||
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