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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.013G098600.1 |
Common Name | B456_013G098600, LOC105782938 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
bHLH |
Protein Properties |
Length: 556aa MW: 59113.3 Da PI: 5.712 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.013G098600.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 27.1 | 7.3e-09 | 372 | 420 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq
Gorai.013G098600.1 372 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 420
58*************************9....677*****************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 556 aa
Download sequence Send
to blast |
MDVGEKDKYE LEKRNDNSLN YQASSMSSAW QFGGSNLTST PMSLVSSDNP LVIGSSSASA 60 SMGDSFCSNL WEHPSNSQNL GFCDINVQNG ASSSNAMGIG RGGPASVRGS IDRPFEMGWN 120 ASSSMLKGGI FLPNASGVLP SSLSQLPTDS AFIERAAKFS SFNGGNFSDI VNPFGIPEAM 180 GVYARGVGLM QGPQDVYTIS GIKSISGVES QRSKLITTEA SRDLPAENRA TQESPLKNER 240 NGGSLVRSNE EAKQGNGGSG NESNEAESSG GAGGHDEPSA LDGTAGESSA KILSSKKRKR 300 SVQEAEVDQA KGSQSPVEAT KDGAENQQKV DQNQTTMVNK TTAKHGKQGS QASDPPKEEY 360 IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ 420 RQVEFLSMKL ATVNPRVDCN IEGLLAKDII QSRAGPSTLG FSPDLSVGYP PLHPSQPGLG 480 PGGFPVMENN ADIIRRTLSS HFTPMTGGFK EPNQLSNAWE DELHNVVQMN YGTSTASDSQ 540 EVNGSQPSGH TKVEL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EF146811 | 9e-91 | EF146811.1 Populus trichocarpa clone WS01214_F06 unknown mRNA. |