PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G098000.4

Common Name

B456_013G098000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 319aa MW: 35232.9 Da PI: 6.1123

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G098000.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.5	3.6e-16	55	104	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f++Lr+l+P+ ++K + a+ L +++eY+++Lq Gorai.013G098000.4 55 RSKHSVTEQRRRSKINERFQRLRDLIPNT----DQKRDTASFLLEVIEYVQYLQ 104 899***********************8....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	7.8E-24	51	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-19	51	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.444	53	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-13	55	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.56E-15	55	108	No hit	No description
SMART	SM00353	1.6E-12	59	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MRTGKGSQEE EEYEEEEFGS KKGGFSSNQT MSFNPNNNST TNKDGKNNDK ANAIRSKHSV 60 TEQRRRSKIN ERFQRLRDLI PNTDQKRDTA SFLLEVIEYV QYLQEKVQKY EDSYQGWSSE 120 PAKLMPWSLV GHPQAIKNGS GPGATFARKF DENNTNINPT VITSGPNAVE TDPIRYVTSK 180 TMDCQTELAN NGTHLPIQGE NVLVHPLQRP VSETQSTECL VGNDIPINQQ EDLTIEGGTI 240 SISSVYSQGL LSALAQALQG SGLDLSQANM SVQIDLGKHA NRGLSAKEPH NCPHQAMTHL 300 RDVSSGEDSD NAQKRLKK*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012464562.1	0.0	PREDICTED: transcription factor BIM2-like isoform X1
Swissprot	Q9CAA4	1e-105	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A0D2W4J5	0.0	A0A0D2W4J5_GOSRA; Uncharacterized protein
STRING	Gorai.013G098000.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	4e-78	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Gorai.013G098000.4

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]