PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 504aa MW: 55702.6 Da PI: 7.61

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G095700.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.1	8e-41	170	245	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv gC++dls+ k+yh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh l efDe+krsCr+rLa+hnerrrk Gorai.013G095700.2 170 CCQVYGCNKDLSSSKDYHKRHKVCEAHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDEGKRSCRKRLAGHNERRRKL 245 6*************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.9E-34	163	232	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.436	168	245	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.88E-38	169	249	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.6E-32	171	244	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010468	Biological Process	regulation of gene expression
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MESWSYGSEG KGLLFTDEMD VDAFSRSRKA MLSWDLKPST DLEGVESMEF MDFGIAADMN 60 KKPFYGNTSM GIFGAEFGND STKSLVSPTC MISSTSDFGE EESGSKHCSS LMDSNSQESS 120 LIDLKLGRLT DYKDAHHGKF LKETSVVSPV RPAIVPKKAR TTSSHSQIPC CQVYGCNKDL 180 SSSKDYHKRH KVCEAHSKTA KVIVNGIEQR FCQQCSRFHL LAEFDEGKRS CRKRLAGHNE 240 RRRKLHFNTF SGKSHKLPHS YQGTKFLGTS IPKQMPFVIP NIFQVDFLHP ERHAYSNQYQ 300 QVKSEEKPMY SSQSAMPITN GQSSFFHMHD SGKQHLSGTL SSATEVFGAP SAAPTVKELS 360 GVSRSDCALS LLSAQSLDLS SHVTGIQMTR PLINQAGLAH RSTEKSAVMS YSEKGSSFYS 420 CGMNPTGVSQ EGSVVVPDAG HTANFEGKVQ DLDLLSARYC LSPETGTTVD LLQLSTHLQR 480 VEQQRNSMQV KQENEDLFYF LST*

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MESWSYGSEG KGLLFTDEMD VDAFSRSRKA MLSWDLKPST DLEGVESMEF MDFGIAADMN  60
KKPFYGNTSM GIFGAEFGND STKSLVSPTC MISSTSDFGE EESGSKHCSS LMDSNSQESS  120
LIDLKLGRLT DYKDAHHGKF LKETSVVSPV RPAIVPKKAR TTSSHSQIPC CQVYGCNKDL  180
SSSKDYHKRH KVCEAHSKTA KVIVNGIEQR FCQQCSRFHL LAEFDEGKRS CRKRLAGHNE  240
RRRKLHFNTF SGKSHKLPHS YQGTKFLGTS IPKQMPFVIP NIFQVDFLHP ERHAYSNQYQ  300
QVKSEEKPMY SSQSAMPITN GQSSFFHMHD SGKQHLSGTL SSATEVFGAP SAAPTVKELS  360
GVSRSDCALS LLSAQSLDLS SHVTGIQMTR PLINQAGLAH RSTEKSAVMS YSEKGSSFYS  420
CGMNPTGVSQ EGSVVVPDAG HTANFEGKVQ DLDLLSARYC LSPETGTTVD LLQLSTHLQR  480
VEQQRNSMQV KQENEDLFYF LST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-29	162	244	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622330	0.0	KJ622330.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL22) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012464919.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6
Refseq	XP_012464920.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6
TrEMBL	A0A0D2TYG2	0.0	A0A0D2TYG2_GOSRA; Uncharacterized protein
STRING	Gorai.013G095700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14770	9	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	5e-52	SBP family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G095700.2
Entrez Gene	105783810

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]