PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G090200.1
Common NameB456_013G090200, LOC105783562
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 490aa    MW: 52417.3 Da    PI: 8.3873
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G090200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1092.2e-34236292259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgynWrKYGqK+vkgsefprsYY+Cts+gCpvkkkvers  d++v+ei+Y+g+Hnh+
  Gorai.013G090200.1 236 DDGYNWRKYGQKQVKGSEFPRSYYKCTSPGCPVKKKVERSI-DGQVTEIIYKGQHNHQ 292
                         8****************************************.***************8 PP
2WRKY105.33.2e-33407465159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gC+v+k+ver+a++pk+v++tYeg+Hnh+
  Gorai.013G090200.1 407 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTLGCNVRKHVERAATNPKAVITTYEGKHNHN 465
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-30230294IPR003657WRKY domain
SuperFamilySSF1182901.57E-26233294IPR003657WRKY domain
SMARTSM007746.3E-38235293IPR003657WRKY domain
PfamPF031062.6E-26236292IPR003657WRKY domain
PROSITE profilePS5081125.029236294IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.8E-36392467IPR003657WRKY domain
SuperFamilySSF1182903.01E-29399467IPR003657WRKY domain
PROSITE profilePS5081137.493402467IPR003657WRKY domain
SMARTSM007741.3E-38407466IPR003657WRKY domain
PfamPF031061.7E-25408464IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MGESQEQKPS SQPSKTVAVS RPTITPPPRP FTDALFNGGL GMMGFSPGPM TLVSNLFPDS  60
DELKTFSQLL AGAMASPAAG KIPNFFPLTT TEGQGGVSGS GGGGDDTGSR FRHNKPAGLV  120
IAQPPPMFTL PTGLSPASLL ESPGFSVFSP IAQGPFGMTH QQALAQVTAQ AAQAQCSSAA  180
AASLAPVSAF TANMTTNQQM PISLHSSTVT VNEPSDACQS DHRSQPASLI VDKPADDGYN  240
WRKYGQKQVK GSEFPRSYYK CTSPGCPVKK KVERSIDGQV TEIIYKGQHN HQPPPPSKHA  300
KDTGSLNGNP GKQGNSESAS QLQCGSSNIL MSKKDQESSQ ATAEHISGTS DSEEAGENEV  360
GVDEKDEDEP DPKRRSTEIR VSEPASSHRT VTEPRIIVQT TSEVDLLDDG YRWRKYGQKV  420
VKGNPYPRSY YKCTTLGCNV RKHVERAATN PKAVITTYEG KHNHNVPAAK RSSHNTSTVK  480
HHKQECRMQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-41236468878Probable WRKY transcription factor 4
2lex_A2e-41236468878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0311180.0KF031118.1 Gossypium hirsutum WRKY transcription factor 116 (WRKY116) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464557.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9XI900.0WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A0D2SAZ20.0A0A0D2SAZ2_GOSRA; Uncharacterized protein
STRINGGorai.013G090200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-152WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]