PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 299aa MW: 33163.6 Da PI: 6.4434

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G080100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	123	142	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r n++ H+ Gorai.013G080100.1 123 FSCSVCNKTFNRYNNMQMHM 142 89*****************9 PP
2	zf-C2H2	16	3.5e-05	208	230	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk+F + + ++H +++ Gorai.013G080100.1 208 FECRKCGKPFAVRGDWRTHEKNC 230 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.84E-5	119	145	No hit	No description
PROSITE profile	PS50157	10.429	123	150	IPR007087	Zinc finger, C2H2
Pfam	PF12874	7.7E-5	123	142	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.5E-6	123	142	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.071	123	145	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	125	145	IPR007087	Zinc finger, C2H2
SMART	SM00355	200	171	203	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	4.05E-6	191	228	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.5E-5	194	228	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.6	208	228	IPR007087	Zinc finger, C2H2
SMART	SM00355	60	208	228	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010087	Biological Process	phloem or xylem histogenesis
GO:0010305	Biological Process	leaf vascular tissue pattern formation
GO:0010588	Biological Process	cotyledon vascular tissue pattern formation
GO:0048364	Biological Process	root development
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MQAPSFTYND ISPRESSCHE ADDHVEGEDS IVLSLGPPGQ APRISKYPLT SHPSSSTSSK 60 VPSCPNPTST TETESGVTVA LHIGPPTTVE TSSSNSNDIG NSLVEGQYWI PSPAQILVGP 120 TQFSCSVCNK TFNRYNNMQM HMWGHGSQYR KGPESLRGTK PASSMLRLPC YCCAEGCKNN 180 IDHPRSRPLK DFRTLQTHYK RKHGAKPFEC RKCGKPFAVR GDWRTHEKNC GKLWFCICGS 240 DFKHKRSLKD HVRAFGDGHA PHTVEYCEVE VEDDDNDDVD DNDNDDDNDE GNHAPLFF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269\|PubMed:18643975, ECO:0000305\|PubMed:20541552}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012461198.1	0.0	PREDICTED: zinc finger protein WIP6
Refseq	XP_016704496.1	0.0	PREDICTED: zinc finger protein WIP6-like
Swissprot	Q9FX68	1e-127	ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBL	A0A0D2VAV4	0.0	A0A0D2VAV4_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8KPT8	0.0	A0A1U8KPT8_GOSHI; zinc finger protein WIP6-like
STRING	Gorai.013G080100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	1e-120	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Gorai.013G080100.1
Entrez Gene	105781192

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]