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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.013G080000.1 |
| Common Name | B456_013G080000, LOC105783878 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
RAV |
| Protein Properties |
Length: 346aa MW: 38495.4 Da PI: 9.5271 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.013G080000.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 43.7 | 6.7e-14 | 48 | 96 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+ykGV + +grW A+I++ ++r++lg+f ++eAaka++ a+++++g
Gorai.013G080000.1 48 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDIAARRFRG 96
89****9888.8*********3.....5**********99*************98 PP
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| 2 | B3 | 98.2 | 5.2e-31 | 179 | 275 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
f+k+ tpsdv+k++rlv+pk++ae+h g +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+++
Gorai.013G080000.1 179 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqtGTAFSKEVLLNFEDVRGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLNAGDIVSFQRST 269
89*************************987743444778999**********************************************775 PP
SSEE.. CS
B3 87 rsefel 92
e++l
Gorai.013G080000.1 270 GPEKQL 275
555545 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 346 aa
Download sequence Send
to blast |
MDGSSCIDDS TTSDSMNVSP LSPLCRVGSG NSGVILDTEA ESRKLPSSKY KGVVPQPNGR 60
WGAQIYEKHQ RVWLGTFNEE DEAAKAYDIA ARRFRGRDAV TNFKQAEKTE GDDMEMAFLE 120
SRSKAEIVDM LRKHTYNDEL EQSRRSYGLD GNGKRVVKYN AGFGPFSFGL GLKPREQLFE 180
KAVTPSDVGK LNRLVIPKQH AEKHFPLQTG TAFSKEVLLN FEDVRGKVWR FRYSYWNSSQ 240
SYVLTKGWSR FVKEKNLNAG DIVSFQRSTG PEKQLYIDCK ARTGSVSGSA NPAVPVPFVR 300
LFGVNIFNIS GGGGDSVGGC NGKRTREMEL LELEFSKKQR VIDAL*
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| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18718758}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
| Publications
? help Back to Top |
- Paterson AH, et al.
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
Nature, 2012. 492(7429): p. 423-7
[PMID:23257886] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Choi D, et al.
iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
Mol Plant, 2014. 7(5): p. 792-813
[PMID:24380880] - Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
TEMPRANILLO is a regulator of juvenility in plants.
Sci Rep, 2014. 4: p. 3704
[PMID:24424565] - Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
RAV genes: regulation of floral induction and beyond.
Ann. Bot., 2014. 114(7): p. 1459-70
[PMID:24812253] - Marín-González E, et al.
SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
Plant Physiol., 2015. 169(2): p. 1214-24
[PMID:26243615] - Matías-Hernández L, et al.
TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
Plant Physiol., 2016. 170(3): p. 1624-39
[PMID:26802039]
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