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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G079600.2 | ||||||||
Common Name | B456_013G079600, LOC105783998 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 334aa MW: 36286.1 Da PI: 6.8487 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.9 | 2e-14 | 150 | 196 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Gorai.013G079600.2 150 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 196 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.907 | 147 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.9E-12 | 150 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-14 | 151 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-14 | 151 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.5E-13 | 153 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.51E-5 | 160 | 199 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 2.4E-4 | 232 | 279 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MCAKKEEYQG DYPRPIHNLQ ASQQHHQLHN DELFGATTGG LVFPQLPWSF PPVHALSPIQ 60 YFTGNPVQDH VHDSFLVPPP SSSYGGLFTP TAPPAAALQF AYDGAPSVNR LRILSDSFGA 120 VGSAPLGLQA ELGKMTAQEI MDAKAMAASK SHSEAERRRR ERINNHLAKL RSLLPSTTKT 180 DKASLLAEVI QHVKELKRQT CLIAETSPVP TETDELTVDT SDQDGKFVIK ASLCCEDRSD 240 LLPDLIKALK DLRLKTLKAE ITTLGGRVKN VLFITGEEQE SSCSSDGGDV IGSIQEALKA 300 VMEKSTCGDE SNSSGNVKRQ RTNISTVLQR RSL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 160 | ERRRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC751427 | 0.0 | KC751427.1 Gossypium hirsutum bHLH transcription factor (bHLH3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012465192.1 | 0.0 | PREDICTED: transcription factor bHLH30-like | ||||
Swissprot | Q9S7Y1 | 4e-98 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A0D2VAU9 | 0.0 | A0A0D2VAU9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G079600.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 6e-93 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G079600.2 |
Entrez Gene | 105783998 |
Publications ? help Back to Top | |||
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