PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G079600.1

Common Name

B456_013G079600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 381aa MW: 41657.5 Da PI: 9.5557

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G079600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.7	1.1e-14	150	243	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC.............................................TTS-STCHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas..........................................kapskKlsKaeiLekAveYI 51 ++h+e+ErrRR+riN+ +++Lr+llP+ + ++++K +Ka+ L ++++++ Gorai.013G079600.1 150 KSHSEAERRRRERINNHLAKLRSLLPSTTkvrlavvprrreskqrkglsidmikrnqgavpwkflagsstkLTRKPKTDKASLLAEVIQHV 240 79***********************777*************************************9***************** PP HHH CS HLH 52 ksL 54 k+L Gorai.013G079600.1 241 KEL 243 *99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.132	147	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.1E-12	150	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-12	151	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.4E-14	151	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-9	153	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.4E-14	220	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-12	221	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	2.9E-4	279	326	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MCAKKEEYQG DYPRPIHNLQ ASQQHHQLHN DELFGATTGG LVFPQLPWSF PPVHALSPIQ 60 YFTGNPVQDH VHDSFLVPPP SSSYGGLFTP TAPPAAALQF AYDGAPSVNR LRILSDSFGA 120 VGSAPLGLQA ELGKMTAQEI MDAKAMAASK SHSEAERRRR ERINNHLAKL RSLLPSTTKV 180 RLAVVPRRRE SKQRKGLSID MIKRNQGAVP WKFLAGSSTK LTRKPKTDKA SLLAEVIQHV 240 KELKRQTCLI AETSPVPTET DELTVDTSDQ DGKFVIKASL CCEDRSDLLP DLIKALKDLR 300 LKTLKAEITT LGGRVKNVLF ITGEEQESSC SSDGGDVIGS IQEALKAVME KSTCGDESNS 360 SGNVKRQRTN ISTVLQRRSL *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MCAKKEEYQG DYPRPIHNLQ ASQQHHQLHN DELFGATTGG LVFPQLPWSF PPVHALSPIQ  60
YFTGNPVQDH VHDSFLVPPP SSSYGGLFTP TAPPAAALQF AYDGAPSVNR LRILSDSFGA  120
VGSAPLGLQA ELGKMTAQEI MDAKAMAASK SHSEAERRRR ERINNHLAKL RSLLPSTTKV  180
RLAVVPRRRE SKQRKGLSID MIKRNQGAVP WKFLAGSSTK LTRKPKTDKA SLLAEVIQHV  240
KELKRQTCLI AETSPVPTET DELTVDTSDQ DGKFVIKASL CCEDRSDLLP DLIKALKDLR  300
LKTLKAEITT LGGRVKNVLF ITGEEQESSC SSDGGDVIGS IQEALKAVME KSTCGDESNS  360
SGNVKRQRTN ISTVLQRRSL *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	160	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC751427	0.0	KC751427.1 Gossypium hirsutum bHLH transcription factor (bHLH3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465192.1	0.0	PREDICTED: transcription factor bHLH30-like
Swissprot	Q9S7Y1	9e-89	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A0D2SAG8	0.0	A0A0D2SAG8_GOSRA; Uncharacterized protein
STRING	Gorai.013G079600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7048	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-83	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G079600.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]