PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G072100.1
Common NameB456_013G072100, LOC105784169
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 435aa    MW: 48659.4 Da    PI: 5.0886
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G072100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS298.31.9e-91444302374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPi 90 
                         ++lLl+cA a++++d +laq++++ l++ as  gd++qRl+a f++AL +r +r +++ ++    s  +     + +++++l  ++++ P+
  Gorai.013G072100.1  44 EKLLLHCASALENNDVTLAQQVMWVLNNVASTVGDTNQRLTAWFLRALISRASRVCPTSMNFNGGSMFQ----RRLMTVTELvgYVDLIPW 130
                         689***************************************************777777666555554....333333344559****** PP

                GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfef 178
                         ++f++ + N aI +aveg  +vHi+Df+i++++QWp+L++aLa+RpegppslRiT+ +   ++    + + ee+g+rLa+fA+  +vpfef
  Gorai.013G072100.1 131 HRFGFCASNGAIFKAVEGYGKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPSCRPQVpplLNVSKEEVGHRLANFAKFRDVPFEF 221
                         *******************************************************9887555578889999******************** PP

                GRAS 179 nvl..............vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFl 254
                         +v                ++ l++l+ ++L+++ +Eal++n++  l +l de+   +   rd++L+++k+l+P+++vvv++++d++++s+ 
  Gorai.013G072100.1 222 HVKdddpclsnetfatqFESLLTQLTRSQLDLRDDEALVINCQNWLRYLSDETKGNTTtVRDAFLDVIKGLNPRIIVVVDEDCDLSASSLS 312
                         *8899999898886665555677779999*********************9987666559******************************* PP

                GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                          r++ +++y +  fd+le+ lp++s++r  +E   +g +i+n+v  eg++r+er e+  k ++r+++aGF ++p+ e++ +++k+ll +++
  Gorai.013G072100.1 313 SRITTCFNYLWIPFDALETFLPKDSRQRLEYESD-IGHKIENIVGFEGFRRTERLESGVKLSQRINDAGFVSLPFCEDTINEVKSLLDEHA 402
                         **********************************.******************************************************** PP

                GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                           g+ ++ e++ lvl+Wk+++ v+++aW+
  Gorai.013G072100.1 403 -SGWGMKREEDMLVLTWKGHNSVFATAWT 430
                         .889999999******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.77917411IPR005202Transcription factor GRAS
PfamPF035146.4E-8944430IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MKTEVRGNGG SVSLQNPSLF NTPLDPITGA LKGCLGSLDG ACIEKLLLHC ASALENNDVT  60
LAQQVMWVLN NVASTVGDTN QRLTAWFLRA LISRASRVCP TSMNFNGGSM FQRRLMTVTE  120
LVGYVDLIPW HRFGFCASNG AIFKAVEGYG KVHILDFSIT HCMQWPTLID ALAKRPEGPP  180
SLRITVPSCR PQVPPLLNVS KEEVGHRLAN FAKFRDVPFE FHVKDDDPCL SNETFATQFE  240
SLLTQLTRSQ LDLRDDEALV INCQNWLRYL SDETKGNTTT VRDAFLDVIK GLNPRIIVVV  300
DEDCDLSASS LSSRITTCFN YLWIPFDALE TFLPKDSRQR LEYESDIGHK IENIVGFEGF  360
RRTERLESGV KLSQRINDAG FVSLPFCEDT INEVKSLLDE HASGWGMKRE EDMLVLTWKG  420
HNSVFATAWT ELED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B8e-581642965472Protein SHORT-ROOT
5b3h_B2e-581642911418Protein SHORT-ROOT
5b3h_E2e-581642911418Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465420.10.0PREDICTED: scarecrow-like protein 32
RefseqXP_016703843.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A0D2W3P60.0A0A0D2W3P6_GOSRA; Uncharacterized protein
TrEMBLA0A1U8KS770.0A0A1U8KS77_GOSHI; scarecrow-like protein 32
TrEMBLA0A2P5VP810.0A0A2P5VP81_GOSBA; Uncharacterized protein
STRINGGorai.013G072100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17642910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-123GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]