PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G071600.1
Common NameB456_013G071600, LOC105781845
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 259aa    MW: 29993.4 Da    PI: 5.0288
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G071600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.7e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEd +l  +++++G  +W+  +++ g++R++k+c++rw +yl
  Gorai.013G071600.1 14 KGEWSAEEDHKLRSYIQRYGHWNWRELPKYAGLKRCGKSCRLRWMNYL 61
                        799*****************99************************97 PP
2Myb_DNA-binding53.84.3e-1767111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++T+eEd l+++++ ++G++ W+tIa+ ++ gRt++++k+ w+ +
  Gorai.013G071600.1  67 RGNFTEEEDALIIKLHDEMGNR-WSTIAKSFP-GRTDNEIKNQWHAH 111
                         89********************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.818961IPR017930Myb domain
SuperFamilySSF466892.43E-3011108IPR009057Homeodomain-like
SMARTSM007171.4E-101363IPR001005SANT/Myb domain
PfamPF002498.7E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-231568IPR009057Homeodomain-like
CDDcd001675.19E-81661No hitNo description
PROSITE profilePS5129425.97462116IPR017930Myb domain
SMARTSM007173.8E-1766114IPR001005SANT/Myb domain
PfamPF002492.6E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2669115IPR009057Homeodomain-like
CDDcd001675.00E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVRAPFYDKN GMKKGEWSAE EDHKLRSYIQ RYGHWNWREL PKYAGLKRCG KSCRLRWMNY  60
LRPELKRGNF TEEEDALIIK LHDEMGNRWS TIAKSFPGRT DNEIKNQWHA HLKKRTKRDE  120
KEKSDCWQSE ATRNENICEG EGEGEDESNS ILVDTLDNMI LESSPLSPAT CTRIEQSSFS  180
SGRGPMFSFN VVGGLEDNCL PCLGTYKNEG SGDFWSEPFV ADNTSSLEKG GFEMLLEYED  240
MYHDDSAYLR YEFTQGWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461816.10.0PREDICTED: transcription factor MYB82-like
TrEMBLA0A0D2VBU50.0A0A0D2VBU5_GOSRA; Uncharacterized protein
STRINGGorai.013G071600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3716322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.14e-54myb domain protein 14
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]