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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.013G053800.1 |
| Common Name | B456_013G053800, LOC105782972 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 242aa MW: 27658.4 Da PI: 9.5431 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.013G053800.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 79.3 | 2.6e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ie +s rqvtfskRrng+lKKA+EL +LCdaev +iifsst kl+ ++s
Gorai.013G053800.1 9 KKIEKSSSRQVTFSKRRNGLLKKAKELAILCDAEVGLIIFSSTSKLHHFAS 59
68**********************************************986 PP
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| 2 | K-box | 84.7 | 1.9e-28 | 83 | 172 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
+++ + +++e+a L+++++ Lq+ qR+l+G++L+ Ls+k+Lq Le+qLe slk++R +K+++l++qi+el +k +++++en + +kkl+
Gorai.013G053800.1 83 PASELKFWKKEVASLRQQLNDLQECQRQLMGKELSGLSFKDLQGLENQLEMSLKRVRMRKDQILTNQIDELNRKGHRIHQENLEVHKKLD 172
567899********************************************************************************9985 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 1.9E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 31.216 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.81E-43 | 2 | 77 | No hit | No description |
| SuperFamily | SSF55455 | 2.62E-32 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.3E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.6E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.3E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.3E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.7E-26 | 85 | 171 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 15.731 | 87 | 177 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 242 aa
Download sequence Send
to blast |
MGRGKIEIKK IEKSSSRQVT FSKRRNGLLK KAKELAILCD AEVGLIIFSS TSKLHHFASS 60
SMNSVIERYN KYKEENHHQL LDPASELKFW KKEVASLRQQ LNDLQECQRQ LMGKELSGLS 120
FKDLQGLENQ LEMSLKRVRM RKDQILTNQI DELNRKGHRI HQENLEVHKK LDLICHENTE 180
LQQKVNGNGA EEANEGSKSL SHSYGFNSGY DYLQAPVVDL RLSQPQQLPE ADTSNLKTRS 240
T*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. |
