PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G048000.1 | ||||||||
Common Name | B456_013G048000, LOC105784341 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 249aa MW: 26519.5 Da PI: 6.7755 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.5 | 0.00013 | 141 | 180 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R ++i ++++ L++l+ + +K + a++L +A+ YI+ L Gorai.013G048000.1 141 KVRKEKIGDRINALQQLVSPF-----GKTDTASVLHEAMGYIRFL 180 568899*************98.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.59E-5 | 122 | 185 | No hit | No description |
PROSITE profile | PS50888 | 10.791 | 131 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-11 | 140 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-8 | 141 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MMAETEADHG FEGDQETATT TTTSSSFSQL LFGGGHDDDG DTLGPAQSFN YTCSSFAVKS 60 TPKMLCFGGC HPNDADIVLG KPAINAAPKA GLTCSDSSST SSGNNTKSMQ CRGAIVEAQP 120 TRRRTNKRSK VENPTTGGHA KVRKEKIGDR INALQQLVSP FGKTDTASVL HEAMGYIRFL 180 HDQVQVLCSP YLQHPHDGEN NGGEESRKEL KSRGLCLVPV ACTAHVENSN GADFWSPATM 240 GNNVIIRQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 128 | RRTNKRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012465652.1 | 0.0 | PREDICTED: transcription factor bHLH113-like isoform X1 | ||||
Swissprot | Q9LT67 | 1e-53 | BH113_ARATH; Transcription factor bHLH113 | ||||
TrEMBL | A0A0D2VAP9 | 0.0 | A0A0D2VAP9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G048000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7402 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 8e-53 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G048000.1 |
Entrez Gene | 105784341 |
Publications ? help Back to Top | |||
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