PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G045100.1 | ||||||||
Common Name | B456_013G045100, LOC105784519 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 267aa MW: 29433.1 Da PI: 7.1335 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.8 | 1.6e-12 | 59 | 106 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h Er RR+++++ f++L llP++ s+K +K++i+ +Av++I+ L+ Gorai.013G045100.1 59 MHIWTERERRKKMRNMFSNLHALLPHL----SPKADKSTIVDEAVKHIQTLE 106 56678*********************9....9*****************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-14 | 54 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.141 | 55 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-14 | 58 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.16E-11 | 58 | 110 | No hit | No description |
Pfam | PF00010 | 6.3E-10 | 60 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-7 | 63 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 6.65E-4 | 189 | 232 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MSATPGSFFL CENHPFPPPS NNNSGGGGAN GSEDNNQHEK QPLQDSTNNK RGGESDHEMH 60 IWTERERRKK MRNMFSNLHA LLPHLSPKAD KSTIVDEAVK HIQTLEKTLQ KLQKQKLDRL 120 QEGPNPIDLG HQDTSREAFM ADQVLSGNDA AAKDLIIKSN SVTVAQPRLQ FQTWTSSNVV 180 LNICGKEAQI SVCSPKKPGL FTSVCCILEK HYLEVISAHV SSQSNRSIFM IQAHQVGSSG 240 AYNHQVSEVD EIFKQAAAEI MFCLTS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX590353 | 1e-133 | JX590353.1 Gossypium hirsutum clone NBRI_GE25251 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012465876.1 | 0.0 | PREDICTED: transcription factor bHLH95-like isoform X1 | ||||
TrEMBL | A0A0D2VAJ0 | 0.0 | A0A0D2VAJ0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G045100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5074 | 25 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 1e-46 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G045100.1 |
Entrez Gene | 105784519 |
Publications ? help Back to Top | |||
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