PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G036400.4

Common Name

B456_013G036400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 291aa MW: 32073.1 Da PI: 8.36

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G036400.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.5	3.2e-10	236	283	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Gorai.013G036400.4 236 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 283 8************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.50E-9	230	287	No hit	No description
SuperFamily	SSF47459	3.27E-15	230	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.0E-16	232	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.618	232	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-7	236	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-9	238	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MNTALPEMLQ CSDLTVLERQ RDRLKWQEEQ FQQQQQQSYF SELSCGAFSS QTNHVQGFQG 60 GFMGGASGDS VLSDMVMARQ VKPDPGLESP WPELGKVDMA AMGFGPCGYG NGPSFDMNHA 120 ISRTSSCPPA VAATKAVEVK VNSEKMASAV DKESFKKRKA EKLQNTKVVA ENESKRIKSC 180 EDEGEESKIT GPNTNKSSNN KKEASGDASK ENSKVSEVQK PDFIHVRARR GQATDSHSLA 240 ERVRREKISE RMKYLQDLVP GCNKITGKAG MLDEIINYVQ SLQRQVEVKK *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in hypocotyls and cotyledons. Expressed in leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534, ECO:0000269\|PubMed:23221598}.

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269\|PubMed:23221598}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU532258	0.0	EU532258.1 Gossypium barbadense clone I8-1 ISSR marker genomic sequence.
GenBank	EU532309	0.0	EU532309.1 Gossypium barbadense clone I11-11 ISSR marker genomic sequence.
GenBank	EU532316	0.0	EU532316.1 Gossypium barbadense clone I11-19 ISSR marker genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012464358.1	0.0	PREDICTED: transcription factor HBI1-like
Swissprot	Q9ZPW3	1e-48	HBI1_ARATH; Transcription factor HBI1
TrEMBL	A0A0D2V8S3	0.0	A0A0D2V8S3_GOSRA; Uncharacterized protein
STRING	Gorai.013G036400.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18300.2	1e-48	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G036400.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]