PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G035200.1
Common NameB456_013G035200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 139aa    MW: 15948.2 Da    PI: 8.7511
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G035200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.32.5e-115195549
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49
                        ++ +rk++NRe+ArrsR RKk+ ++ L+ +  +L + N++ +  l
  Gorai.013G035200.1 51 RKRKRKASNRESARRSRMRKKKHLDDLTAELTQLREDNHQIILSL 95
                        6789**********************************9877554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.5E-1447111IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.8E-1049126No hitNo description
PROSITE profilePS5021710.2084991IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.13E-1151102No hitNo description
PfamPF001709.2E-95192IPR004827Basic-leucine zipper domain
CDDcd147023.54E-1552102No hitNo description
PROSITE patternPS0003605469IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MSQILSETFL SGFMILVQSL SVVFLYCGTS SGASTVTQVS EELQALLMEE RKRKRKASNR  60
ESARRSRMRK KKHLDDLTAE LTQLREDNHQ IILSLNITSQ SYLHVEAENS VLRAQTNELS  120
CRLQSLEDII TFLQWKQW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15055RKRKRK
25371KRKASNRESARRSRMRKKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461770.17e-75PREDICTED: ocs element-binding factor 1-like
SwissprotC0Z2L52e-33BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A0D2S7S31e-94A0A0D2S7S3_GOSRA; Uncharacterized protein
STRINGGorai.013G035200.12e-95(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.18e-36basic leucine-zipper 44
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]