PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G034600.1
Common NameB456_013G034600, LOC105782671
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 627aa    MW: 69493.1 Da    PI: 5.9612
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G034600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.6e-093734101954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Gorai.013G034600.1 373 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 410
                         664459******************************88 PP
2BELL128.72.1e-41235306172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+a+ag+g++kpYt+lAl++iSrhFrcL+dai +q+
  Gorai.013G034600.1 235 ERQELQSKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDAIAGCGASKPYTALALQTISRHFRCLRDAINGQV 306
                         79*******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.8E-64158304IPR006563POX domain
PfamPF075268.1E-52164302IPR006563POX domain
PROSITE profilePS5007112.163351414IPR001356Homeobox domain
SMARTSM003891.0E-9354418IPR001356Homeobox domain
CDDcd000861.01E-12354415No hitNo description
SuperFamilySSF466892.65E-17355421IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-29357420IPR009057Homeodomain-like
PfamPF059204.2E-18371410IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MASYYTGSDN QRDTAPMIYL RESMPGSFLE GPVLPGNTML YMSSGSYSDA FAGNSQQQNN  60
CVEIPTVEAA TSQQQQILSN MGGLREQDFS GWRDGRNEML AMHLMGRTSA ISHDGQNLQG  120
QGLSLSLGTQ IPYRNPGSGF SSVNQESNKG ELSAFGMSSM VRTIPNSKYL KAAQQLLDEV  180
VNVQKALKQP DGGKNRNSLE NRVKSSKEDD GGSKNVPANQ QESSINSPKE LSHAERQELQ  240
SKLTKLLSML DEVDRRYKQY YHQMQIVVSS FDAIAGCGAS KPYTALALQT ISRHFRCLRD  300
AINGQVQATR TSLGELDASE NSKELRITRL RYVDQQLRQQ RALQQFGMMQ QHAWRPQRGL  360
PESSVSILRA WLFEHFLHPY PKDSDKIMLA RQTGLTRSQV SNWFINARVR LWKPMVEEMY  420
KEEFADAEMD SNSSSDNAVK AATKGDTMTS EDRGEDLQQS GSSSVTERCS NGQLMDSKSE  480
NVHNADISGS TIGAGFLNAS CGEAETEYML QTLREEQRLT MDDSNIFPDT SVHLDGGSHR  540
FMAASGYNVS ELGRFGSGVS LTLGLQHYED GSISMSGGSH HQNFVAMRGD DMYNHIPTET  600
GDFECMNPSN RQHRLSSSQL LHDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-16360417158Homeobox protein Meis1
4xrs_B1e-16360417158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463021.10.0PREDICTED: BEL1-like homeodomain protein 6
SwissprotO656851e-154BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLA0A0D2W2H50.0A0A0D2W2H5_GOSRA; Uncharacterized protein
STRINGGorai.013G034600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-143BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]