PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G032200.2
Common NameB456_013G032200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 101aa    MW: 11352.7 Da    PI: 8.9898
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G032200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.62.4e-095980526
                        --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                         C++f+ tG+C+yGd+Ck+ H+
  Gorai.013G032200.2 59 VCNRFLNTGFCQYGDNCKYFHP 80
                        5******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004512.7E-5338IPR003604Zinc finger, U1-type
SuperFamilySSF576671.56E-14445No hitNo description
PfamPF062203.3E-11538IPR013085Zinc finger, U1-C type
PROSITE profilePS5010314.2865482IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-85585IPR000571Zinc finger, CCCH-type
SMARTSM003560.00315681IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-85987IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-75980IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MPLGKYYCDY CDKQFQDTPA ARKRHLQGLQ HLRAKAQWFH SQNAQDLYQT SVPPFSKGVC  60
NRFLNTGFCQ YGDNCKYFHP NNDSRTPNPP LSTAPPGGGI *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463158.11e-68PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X1
SwissprotQ0JP112e-28C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A0D2V9Y42e-69A0A0D2V9Y4_GOSRA; Uncharacterized protein
STRINGGorai.013G032200.15e-68(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.12e-33C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]