PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G031600.1

Common Name

B456_013G031600, LOC105783736

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 251aa MW: 27146.4 Da PI: 7.1132

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G031600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	91	113	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Gorai.013G031600.1 91 FSCNYCRRKFYSSQALGGHQNAH 113 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.88E-6	89	119	No hit	No description
PROSITE profile	PS50157	11.385	91	118	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	93	113	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MTLPNLGLES ENDSKASSQV ASNISAQEAS TDPSKDTTTT TSCLSNPVKV QPDPGSVSLD 60 LTLHFSANDA EMKGATGETM GINTLSTPRV FSCNYCRRKF YSSQALGGHQ NAHKRERTMA 120 KRAMRMGLLS DRYTSLASLP LHGSAFRSLG VKAHSAMHQG MLPSSQRPVD TRSGARFDQG 180 CFGMPIFMED EEVDLYWPGS FRQVNEERVG SNQAMELSQN PTQSSNIGFI AMATLPRADA 240 SSQLDLTLKL *

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012464806.1	0.0	PREDICTED: zinc finger protein 4-like
Refseq	XP_012464807.1	0.0	PREDICTED: zinc finger protein 4-like
Refseq	XP_012464808.1	0.0	PREDICTED: zinc finger protein 4-like
Swissprot	Q39263	1e-40	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A0D2S7K6	0.0	A0A0D2S7K6_GOSRA; Uncharacterized protein
STRING	Gorai.013G031600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6672	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	5e-43	zinc finger protein 4

Link Out ? help Back to Top
Phytozome	Gorai.013G031600.1
Entrez Gene	105783736

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]