PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G026300.2

Common Name

B456_013G026300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 1389aa MW: 150637 Da PI: 6.4495

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G026300.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.3	8.5e-09	610	651	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e++ d + +G++ +++Ia + ++t +c+++++k Gorai.013G026300.2 610 PWTSEEKEIFMDKLAAFGKD-FRKIATFLD-HKTTADCVEFYYK 651 8***************99.*****.*********98 PP
2	Myb_DNA-binding	30.5	8.2e-10	829	868	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++av +G++ ++ I+r++ +R++ qck ++ Gorai.013G026300.2 829 WTDEEKSVFIQAVSSYGKD-FAMISRCVR-TRSRDQCKVFFS 868 ***************99.*****.******8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.97E-14	594	655	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.53	606	657	IPR017884	SANT domain
SMART	SM00717	1.6E-7	607	655	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-5	609	655	IPR009057	Homeodomain-like
Pfam	PF00249	7.1E-6	609	651	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	11.174	824	875	IPR017884	SANT domain
SMART	SM00717	1.0E-7	825	873	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.65E-10	827	875	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.7E-6	828	869	IPR009057	Homeodomain-like
Pfam	PF00249	3.1E-7	829	868	IPR001005	SANT/Myb domain
CDD	cd00167	6.51E-7	829	867	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1389 aa Download sequence Send to blast
MFTYPSRTHS DFVNTWNQLQ KDHHDNRTCG VNGLGTGQRC ERENSLGSVD WKPLKWSRSG 60 SLSSWGSGFS HSSSSKSLGG VDSGEAKLEL HQKNLAPVQS PSGDAAACVT SAPPSDETTS 120 RKKPRLGWDK SPRVLGFSDC SSPATPSSVA CSSSPGVEEK SFGKAANIDN DVNNLCGSPS 180 FGSQNQLEGS SFSLEKLDIN SIINMGSSLI DLLQSDEPST MDSSFVQSTA INKLLLWKGD 240 ILKALEMTES EIESLETELK SSKDDPGRRC QCPATSSSLP VRENGKSCEE QEAASSMIPQ 300 PAPLKIDPSN DVLEVLQEAN ADIKDGVIDS PGTATSDFML SSSLEKAESL CDVVKAQDCS 360 GNSSSAQLKT MEEVILATDS CNEEAAAVIS GEGSVLVKID NEAHVPESSN SDAGGENMTC 420 DVILTTNKEL ANRSSLVFKK LFPKDQYSIE ISEISNAVRG QISSLIREKI AMRKRHLRFK 480 ERVLTLKFKA FQYAWKEDML SPAMRKYWAK SQKKYELSLR STYGGYQKHR SSSRSRVASS 540 AGNLVLEPTA EMINFTSKLL LDSHVKLYRN ALKMPALILD EQEQLSRFIS SNGLVEDPCA 600 IEKERALINP WTSEEKEIFM DKLAAFGKDF RKIATFLDHK TTADCVEFYY KNHKSECFKK 660 TKKKLDLTKQ GKSSANTYLL TSGKKWSKEF NAASIDVLGS ASVIATHAES GMQKHQTSSS 720 RIFFGGRYSK ISRADDRIAD RLSSFDIIGN DRETAAADVL AGICGSLSSE AMSSCITSSL 780 DPGESFHRDW KCHKVDSLLK RRSTSNVAQN VDDGTCSDES CGEMDPADWT DEEKSVFIQA 840 VSSYGKDFAM ISRCVRTRSR DQCKVFFSKA RKCLGLDLID PRTRNLGTPM SDDANGGGSD 900 AEDACVLERL VVSSDKLGSK PEDLPSNIVC TNMDERNPTS KPILPTDLNV PDENNRKLVD 960 HRDSEAVQTV DSDAGLAELI SECSVDMNID SKAGSLQVQK SFVALGNLNA GRDVTEQGVS 1020 VAVSASLGAA AHPCTPSLDS VAVSKPATSL YENDTKCSAE TSSQSICRID SNKASDGSVG 1080 KNSCSGFSLS AKGLHQIPPD LDSAKKPSVS NNSSANGSAL HDSDGLRCEK ICNLGRLSST 1140 LDYKENEAKQ AQKSVREDES GRLSGKTSVN VTEPHRILRG YPLQVSTLKE MNGDVKCLAT 1200 SKRGSAGPCL AQECYLQKCN SSKSAAELPL LVENLEQAKD RPKSHCRISD TENPGRNGNV 1260 KLFGQILNSS SRDDKVSHFS KQNTEPSNSK PIGNNVDGNS KFDANNHVVE NVPKRSYGFS 1320 DGKRIQTGLS SLPDSSILMA KYPSAFANYP PTSSSQMEQQ ALQTVVHGTD RTLNGVSFPL 1380 KGNKQQQR*

Sequence ? help Back to Top

Protein Sequence Length: 1389 aa Download sequence Send to blast

MFTYPSRTHS DFVNTWNQLQ KDHHDNRTCG VNGLGTGQRC ERENSLGSVD WKPLKWSRSG  60
SLSSWGSGFS HSSSSKSLGG VDSGEAKLEL HQKNLAPVQS PSGDAAACVT SAPPSDETTS  120
RKKPRLGWDK SPRVLGFSDC SSPATPSSVA CSSSPGVEEK SFGKAANIDN DVNNLCGSPS  180
FGSQNQLEGS SFSLEKLDIN SIINMGSSLI DLLQSDEPST MDSSFVQSTA INKLLLWKGD  240
ILKALEMTES EIESLETELK SSKDDPGRRC QCPATSSSLP VRENGKSCEE QEAASSMIPQ  300
PAPLKIDPSN DVLEVLQEAN ADIKDGVIDS PGTATSDFML SSSLEKAESL CDVVKAQDCS  360
GNSSSAQLKT MEEVILATDS CNEEAAAVIS GEGSVLVKID NEAHVPESSN SDAGGENMTC  420
DVILTTNKEL ANRSSLVFKK LFPKDQYSIE ISEISNAVRG QISSLIREKI AMRKRHLRFK  480
ERVLTLKFKA FQYAWKEDML SPAMRKYWAK SQKKYELSLR STYGGYQKHR SSSRSRVASS  540
AGNLVLEPTA EMINFTSKLL LDSHVKLYRN ALKMPALILD EQEQLSRFIS SNGLVEDPCA  600
IEKERALINP WTSEEKEIFM DKLAAFGKDF RKIATFLDHK TTADCVEFYY KNHKSECFKK  660
TKKKLDLTKQ GKSSANTYLL TSGKKWSKEF NAASIDVLGS ASVIATHAES GMQKHQTSSS  720
RIFFGGRYSK ISRADDRIAD RLSSFDIIGN DRETAAADVL AGICGSLSSE AMSSCITSSL  780
DPGESFHRDW KCHKVDSLLK RRSTSNVAQN VDDGTCSDES CGEMDPADWT DEEKSVFIQA  840
VSSYGKDFAM ISRCVRTRSR DQCKVFFSKA RKCLGLDLID PRTRNLGTPM SDDANGGGSD  900
AEDACVLERL VVSSDKLGSK PEDLPSNIVC TNMDERNPTS KPILPTDLNV PDENNRKLVD  960
HRDSEAVQTV DSDAGLAELI SECSVDMNID SKAGSLQVQK SFVALGNLNA GRDVTEQGVS  1020
VAVSASLGAA AHPCTPSLDS VAVSKPATSL YENDTKCSAE TSSQSICRID SNKASDGSVG  1080
KNSCSGFSLS AKGLHQIPPD LDSAKKPSVS NNSSANGSAL HDSDGLRCEK ICNLGRLSST  1140
LDYKENEAKQ AQKSVREDES GRLSGKTSVN VTEPHRILRG YPLQVSTLKE MNGDVKCLAT  1200
SKRGSAGPCL AQECYLQKCN SSKSAAELPL LVENLEQAKD RPKSHCRISD TENPGRNGNV  1260
KLFGQILNSS SRDDKVSHFS KQNTEPSNSK PIGNNVDGNS KFDANNHVVE NVPKRSYGFS  1320
DGKRIQTGLS SLPDSSILMA KYPSAFANYP PTSSSQMEQQ ALQTVVHGTD RTLNGVSFPL  1380
KGNKQQQR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-17	569	659	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-17	569	659	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578805	0.0	JX578805.1 Gossypium hirsutum clone NBRI_GE10901 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017619123.1	0.0	PREDICTED: uncharacterized protein LOC108463731 isoform X2
TrEMBL	A0A0D2V8D6	0.0	A0A0D2V8D6_GOSRA; Uncharacterized protein
STRING	Gorai.013G026300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-156	MYB family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G026300.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]