PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G023000.1

Common Name

B456_013G023000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 263aa MW: 30087.9 Da PI: 9.3647

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G023000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.1	1e-05	165	204	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rR +++ +++ L++l+ + +K + a++L++A YIk Lq Gorai.013G023000.1 165 RRSQKLSDKITALQKLVSPY-----GKTDTASVLQEASLYIKLLQ 204 7999************99.....9**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.734	154	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.17E-4	165	208	No hit	No description
SuperFamily	SSF47459	9.42E-11	165	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-8	169	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MRKAAHLSPL SSQFYNIGNS EAQMPYLDVL MQMESKGNVN GDAFSMEPKI FYNDNQIRDG 60 AFAIPYQSHF NSNFLQDYEY GSSNFDNNFQ QSMSLSSKLA IPYLESESIQ NGRKREIGFN 120 NDPNTALDER NKNKRKKLLT SFEQSHRSSQ ERTEIKDFRL NMPVRRSQKL SDKITALQKL 180 VSPYGKTDTA SVLQEASLYI KLLQEQIQML SSSYKSLRAI HPQEIGKKQE DLKSRGLCLV 240 PISFTQRVTK EEQSSLENLN NM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012461279.1	0.0	PREDICTED: uncharacterized protein LOC105781290
TrEMBL	A0A0D2V854	0.0	A0A0D2V854_GOSRA; Uncharacterized protein
STRING	Gorai.013G023000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17246	6	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	5e-22	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G023000.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]