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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G022000.1 | ||||||||
Common Name | B456_013G022000, LOC105782009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 229aa MW: 25607.2 Da PI: 9.5158 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 54 | 76 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Gorai.013G022000.1 54 YTCSFCWREFKSAQALGGHMNVH 76 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.85E-6 | 51 | 80 | No hit | No description |
SMART | SM00355 | 0.0085 | 54 | 76 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.907 | 54 | 81 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 56 | 76 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MEEAQYLMLM KRRQFLKSHF QVSINSLSET WEEKAFAEDA AGSLGGCIWP PRSYTCSFCW 60 REFKSAQALG GHMNVHRRDR AKLKQSLSPK NEVVSNQNQN PNPLKPSDPK SPHPAADLAH 120 SFSSSRVSAS SKNFGTCSFV QGQHQGLLSS YDDGVINCKR RKIAASTTLP FLVPKEKCYS 180 SLQWQVLGVK PAVAGSMEEL DLELRLGAQP KVKSWNMDQR DCKRMELL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 3e-12 | 49 | 76 | 2 | 29 | superman protein |
2l1o_A | 3e-12 | 49 | 76 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 84 | RRDRAKLKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012461970.1 | 1e-171 | PREDICTED: probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | A0A0D2V844 | 1e-170 | A0A0D2V844_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G022000.1 | 1e-171 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5128 | 25 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 2e-29 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G022000.1 |
Entrez Gene | 105782009 |
Publications ? help Back to Top | |||
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